Reikna, a pure Python GPGPU library¶
Reikna is a library containing various GPU algorithms built on top of PyCUDA and PyOpenCL.
The main design goals are:
- separation of computation cores (matrix multiplication, random numbers generation etc) from simple transformations on their input and output values (scaling, typecast etc);
- separation of the preparation and execution stage, maximizing the performance of the execution stage at the expense of the preparation stage (in other words, aiming at large simulations)
- partial abstraction from CUDA/OpenCL
The installation is as simple as
$ pip install reikna
Community resources¶
- Source repository on GitHub;
- Issue tracker, ibid.;
- Discussion forum on Google Groups.
Contents¶
Introduction¶
This section contains a brief illustration of what reikna does.
For more details see basic and advanced tutorials.
CLUDA¶
CLUDA is an abstraction layer on top of PyCUDA/PyOpenCL.
Its main purpose is to separate the rest of reikna from the difference in their APIs, but it can be used by itself too for some simple tasks.
Consider the following example, which is very similar to the one from the index page on PyCUDA documentation:
import numpy
import reikna.cluda as cluda
N = 256
api = cluda.ocl_api()
thr = api.Thread.create()
program = thr.compile("""
KERNEL void multiply_them(
GLOBAL_MEM float *dest,
GLOBAL_MEM float *a,
GLOBAL_MEM float *b)
{
const SIZE_T i = get_local_id(0);
dest[i] = a[i] * b[i];
}
""")
multiply_them = program.multiply_them
a = numpy.random.randn(N).astype(numpy.float32)
b = numpy.random.randn(N).astype(numpy.float32)
a_dev = thr.to_device(a)
b_dev = thr.to_device(b)
dest_dev = thr.empty_like(a_dev)
multiply_them(dest_dev, a_dev, b_dev, local_size=N, global_size=N)
print((dest_dev.get() - a * b == 0).all())
If you are familiar with PyCUDA or PyOpenCL, you will easily understand all the steps we have made here.
The cluda.ocl_api() call is the only place where OpenCL is mentioned, and if you replace it with cluda.cuda_api() it will be enough to make the code use CUDA.
The abstraction is achieved by using generic API module on the Python side, and special macros (KERNEL, GLOBAL_MEM, and others) on the kernel side.
The argument of compile() method can also be a template, which is quite useful for metaprogramming, and also used to compensate for the lack of complex number operations in CUDA and OpenCL.
Let us illustrate both scenarios by making the initial example multiply complex arrays.
The template engine of choice in reikna is Mako, and you are encouraged to read about it as it is quite useful. For the purpose of this example all we need to know is that ${python_expression()} is a synthax construction which renders the expression result.
import numpy
from numpy.linalg import norm
from reikna import cluda
from reikna.cluda import functions, dtypes
N = 256
dtype = numpy.complex64
api = cluda.ocl_api()
thr = api.Thread.create()
program = thr.compile("""
KERNEL void multiply_them(
GLOBAL_MEM ${ctype} *dest,
GLOBAL_MEM ${ctype} *a,
GLOBAL_MEM ${ctype} *b)
{
const SIZE_T i = get_local_id(0);
dest[i] = ${mul}(a[i], b[i]);
}
""", render_kwds=dict(
ctype=dtypes.ctype(dtype),
mul=functions.mul(dtype, dtype)))
multiply_them = program.multiply_them
r1 = numpy.random.randn(N).astype(numpy.float32)
r2 = numpy.random.randn(N).astype(numpy.float32)
a = r1 + 1j * r2
b = r1 - 1j * r2
a_dev = thr.to_device(a)
b_dev = thr.to_device(b)
dest_dev = thr.empty_like(a_dev)
multiply_them(dest_dev, a_dev, b_dev, local_size=N, global_size=N)
print(norm(dest_dev.get() - a * b) / norm(a * b) <= 1e-6)
Note that CLUDA Thread is created by means of a static method and not using the constructor.
The constructor is reserved for more probable scenario, where we want to include some reikna functionality in a larger program, and we want it to use the existing context and stream/queue (see the Thread constructor).
In this case all further operations with the thread will be performed using the objects provided.
Here we have passed two values to the template: ctype (a string with C type name), and mul which is a Module object containing a single multiplication function.
The object is created by a function mul() which takes data types being multiplied and returns a module that was parametrized accordingly.
Inside the template the variable mul is essentially the prefix for all the global C objects (functions, structures, macros etc) from the module.
If there is only one public object in the module (which is recommended), it is a common practice to give it the name consisting just of the prefix, so that it could be called easily from the parent code.
For more information on modules, see Tutorial: modules and snippets; the complete list of things available in CLUDA can be found in CLUDA reference.
Computations¶
Now it’s time for the main part of the functionality.
reikna provides GPGPU algorithms in the form of Computation-based cores and Transformation-based plug-ins.
Computations contain the algorithm itself; examples are matrix multiplication, reduction, sorting and so on.
Transformations are parallel operations on inputs or outputs of computations, used for scaling, typecast and other auxiliary purposes.
Transformations are compiled into the main computation kernel and are therefore quite cheap in terms of performance.
As an example, we will consider the matrix multiplication.
import numpy
from numpy.linalg import norm
import reikna.cluda as cluda
from reikna.linalg import MatrixMul
api = cluda.ocl_api()
thr = api.Thread.create()
shape1 = (100, 200)
shape2 = (200, 100)
a = numpy.random.randn(*shape1).astype(numpy.float32)
b = numpy.random.randn(*shape2).astype(numpy.float32)
a_dev = thr.to_device(a)
b_dev = thr.to_device(b)
res_dev = thr.array((shape1[0], shape2[1]), dtype=numpy.float32)
dot = MatrixMul(a_dev, b_dev, out_arr=res_dev)
dotc = dot.compile(thr)
dotc(res_dev, a_dev, b_dev)
res_reference = numpy.dot(a, b)
print(norm(res_dev.get() - res_reference) / norm(res_reference) < 1e-6)
Most of the code above should be already familiar, with the exception of the creation of MatrixMul object.
The computation constructor takes two array-like objects, representing arrays that will participate in the computation.
After that the computation object has to be compiled.
The compile() method requires a Thread object, which serves as a source of data about the target API and device, and provides an execution queue.
Transformations¶
Now imagine that you want to multiply complex matrices, but real and imaginary parts of your data are kept in separate arrays. You could create additional kernels that would join your data into arrays of complex values, but this would require additional storage and additional calls to GPU. Transformation API allows you to connect these transformations to the core computation — matrix multiplication — effectively adding the code into the main computation kernel and changing its signature.
Let us change the previous example and connect transformations to it.
import numpy
from numpy.linalg import norm
import reikna.cluda as cluda
from reikna.core import Type
from reikna.linalg import MatrixMul
from reikna.transformations import combine_complex
api = cluda.ocl_api()
thr = api.Thread.create()
shape1 = (100, 200)
shape2 = (200, 100)
a_re = numpy.random.randn(*shape1).astype(numpy.float32)
a_im = numpy.random.randn(*shape1).astype(numpy.float32)
b_re = numpy.random.randn(*shape2).astype(numpy.float32)
b_im = numpy.random.randn(*shape2).astype(numpy.float32)
arrays = [thr.to_device(x) for x in [a_re, a_im, b_re, b_im]]
a_re_dev, a_im_dev, b_re_dev, b_im_dev = arrays
a_type = Type(numpy.complex64, shape=shape1)
b_type = Type(numpy.complex64, shape=shape2)
res_dev = thr.array((shape1[0], shape2[1]), dtype=numpy.complex64)
dot = MatrixMul(a_type, b_type, out_arr=res_dev)
combine_a = combine_complex(a_type)
combine_b = combine_complex(b_type)
dot.parameter.matrix_a.connect(
combine_a, combine_a.output, a_re=combine_a.real, a_im=combine_a.imag)
dot.parameter.matrix_b.connect(
combine_b, combine_b.output, b_re=combine_b.real, b_im=combine_b.imag)
dotc = dot.compile(thr)
dotc(res_dev, a_re_dev, a_im_dev, b_re_dev, b_im_dev)
res_reference = numpy.dot(a_re + 1j * a_im, b_re + 1j * b_im)
print(norm(res_dev.get() - res_reference) / norm(res_reference) < 1e-6)
We have used a pre-created transformation combine_complex() from reikna.transformations for simplicity; developing a custom transformation is also possible and described in Writing a transformation.
From the documentation we know that it transforms two inputs into one output; therefore we need to attach it to one of the inputs of dot (identified by its name), and provide names for two new inputs.
Names to attach to are obtained from the documentation for the particular computation; for MatrixMul these are out, a and b.
In the current example we have attached the transformations to both inputs.
Note that the computation has a new signature now, and the compiled dot object now works with split complex numbers.
Tutorial: modules and snippets¶
Modules and snippets are important primitives in CLUDA which are used in the rest of reikna, although mostly internally.
Even if you do not write modules yourself, you will most likely use operations from the functions module, or common transformations from the transformations module, which are essentially snippet and module factories (callables returning Snippet and Module objects).
Therefore it helps if you know how they work under the hood.
Snippets¶
Snippets are Mako template defs (essentially functions returning rendered text) with the associated dictionary of render keywords.
Some computations which are parametrized by custom code (for example, PureParallel) require this code to be provided in form of a snippet with a certain call signature.
When a snippet is used in a template, the result is quite straightworward: its template function is called, rendering and returning its contents, just as a normal Mako def.
Let us demonstrate it with a simple example. Consider the following snippet:
add = Snippet("""
<%def name="add(varname)">
${varname} + ${num}
</%def>
""",
render_kwds=dict(num=1))
Now we can compile a template which uses this snippet:
program = thr.compile("""
KERNEL void test(int *arr)
{
const SIZE_T idx = get_global_id(0);
int a = arr[idx];
arr[idx] = ${add('x')};
}
""",
render_kwds=dict(add=add))
As a result, the code that gets compiled is
KERNEL void test(int *arr)
{
const SIZE_T idx = get_global_id(0);
int a = arr[idx];
arr[idx] = x + 1;
}
If the snippet is used without parentheses (e.g. ${add}), it is equivalent to calling it without arguments (${add()}).
The root code that gets passed to compile() can be viewed as a snippet with an empty signature.
Modules¶
Modules are quite similar to snippets in a sense that they are also Mako defs with an associated dictionary of render keywords.
The difference lies in the way they are processed.
Consider a module containing a single function:
add = Module("""
<%def name="add(prefix, arg)">
WITHIN_KERNEL int ${prefix}(int x)
{
return x + ${num} + ${arg};
}
</%def>
""",
render_kwds=dict(num=1))
Modules contain complete C entities (function, macros, structures) and get rendered in the root level of the source file.
In order to avoid name clashes, their def gets a string as a first argument, which it has to use to prefix these entities’ names.
If the module contains only one entity that is supposed to be used by the parent code, it is a good idea to set its name to prefix only, to simplify its usage.
Let us now create a kernel that uses this module:
program = thr.compile("""
KERNEL void test(int *arr)
{
const SIZE_T idx = get_global_id(0);
int a = arr[idx];
arr[idx] = ${add(2)}(x);
}
""",
render_kwds=dict(add=add))
Before the compilation render keywords are inspected, and if a module object is encountered, the following things happen:
- This object’s
render_kwdsare inspected recursively and any modules there are rendered in the same way as described here, producing a source file. - The module itself gets assigned a new prefix and its template function is rendered with this prefix as the first argument, with the positional arguments given following it. The result is attached to the source file.
- The corresponding value in the current
render_kwdsis replaced by the newly assigned prefix.
With the code above, the rendered module will produce the code
WITHIN_KERNEL int _module0_(int x)
{
return x + 1 + 2;
}
and the add keyword in the render_kwds gets its value changed to _module0_.
Then the main code is rendered and appended to the previously renderd parts, giving
WITHIN_KERNEL int _module0_(int x)
{
return x + 1;
}
KERNEL void test(int *arr)
{
const SIZE_T idx = get_global_id(0);
int a = arr[idx];
arr[idx] = _module0_(x);
}
which is then passed to the compiler.
If your module’s template def does not take any arguments except for prefix, you can call it in the parent template just as ${add} (without empty parentheses).
Warning
Note that add in this case is not a string, it is an object that has __str__() defined.
If you want to concatenate a module prefix with some other string, you have to either call str() explicitly (str(add) + "abc"), or concatenate it inside a template (${add} abc).
Modules can reference snippets in their render_kwds, which, in turn, can reference other modules.
This produces a tree-like structure with the snippet made from the code passed by user at the root.
When it is rendered, it is traversed depth-first, modules are extracted from it and arranged in a flat list in the order of appearance.
Their positions in render_kwds are replaced by assigned prefixes.
This flat list is then rendered, producing a single source file being fed to the compiler.
Note that if the same module object was used without arguments in several other modules or in the kernel itself, it will only be rendered once. Therefore one can create a “root” module with the data structure declaration and then use that structure in other modules without producing type errors on compilation.
Shortcuts¶
The amount of boilerplate code can be somewhat reduced by using Snippet.create and Module.create constructors.
For the snippet above it would look like:
add = Snippet.create(
lambda varname: "${varname} + ${num}",
render_kwds=dict(num=1))
Note that the lambda here serves only to provide the information about the Mako def’s signature.
Therefore it should return the template code regardless of the actual arguments passed.
If the argument list is created dynamically, you can use template_def() with a normal constructor:
argnames = ['varname']
add = Snippet(
template_def(argnames, "${varname} + ${num}"),
render_kwds=dict(num=1))
Modules have a similar shortcut constructor.
The only difference is that by default the resulting template def has one positional argument called prefix.
If you provide your own signature, its first positional argument will receive the prefix value.
add = Module.create("""
WITHIN_KERNEL int ${prefix}(int x)
{
return x + ${num};
}
""",
render_kwds=dict(num=1))
Of course, both Snippet and Module constructors can take already created Mako defs, which is convenient if you keep templates in a separate file.
Module and snippet discovery¶
Sometimes you may want to pass a module or a snippet inside a template as an attribute of a custom object.
In order for CLUDA to be able to discover and process it without modifying your original object, you need to make your object comply to a discovery protocol.
The protocol method takes a processing function and is expected to return a new object of the same class with the processing function applied to all the attributes that may contain a module or a snippet.
By default, objects of type tuple, list, and dict are discoverable.
For example:
class MyClass:
def __init__(self, coeff, mul_module, div_module):
self.coeff = coeff
self.mul = mul_module
self.div = div_module
def __process_modules__(self, process):
return MyClass(self.coeff, process(self.mul), process(self.div))
Nontrivial example¶
Modules were introduced to help split big kernels into small reusable pieces which in CUDA or OpenCL program would be put into different source or header files.
For example, a random number generator may be assembled from a function generating random integers, a function transforming these integers into random numbers with a certain distribution, and a PureParallel computation calling these functions and saving results to global memory.
These two functions can be extracted into separate modules, so that a user could call them from some custom kernel if he does not need to store the intermediate results.
Going further with this example, one notices that functions that produce randoms with sophisticated distributions are often based on simpler distributions. For instance, the commonly used Marsaglia algorithm for generating Gamma-distributed random numbers requires several uniformly and normally distributed randoms. Normally distributed randoms, in turn, require several uniformly distributed randoms — with the range which differs from the one for uniformly distributed randoms used by the initial Gamma distribution. Instead of copy-pasting the function or setting its parameters dynamically (which in more complicated cases may affect the performance), one just specifies the dependencies between modules and lets the underlying system handle things.
The final render tree may look like:
Snippet(
PureParallel,
render_kwds = {
base_rng -> Snippet(...)
gamma -> Snippet(
} Gamma,
render_kwds = {
uniform -> Snippet(...)
normal -> Snippet(
} Normal,
) render_kwds = {
uniform -> Snippet(...)
}
)
Tutorial: basics¶
Usage of computations¶
All reikna computation classes are derived from the Computation class and therefore share the same API and behavior.
A computation object is an opaque typed function-like object containing all the information necessary to generate GPU kernels that implement some algorithm, along with necessary internal temporary and persistent memory buffers.
Before use it needs to be compiled by calling compile() for a given Thread (thus using its associated device and queue).
This method returns a ComputationCallable object which takes GPU arrays and scalar parameters and calls its internal kernels.
Computations and transformations¶
One often needs to perform some simple processing of the input or output values of a computation.
This can be scaling, splitting complex values into components, padding, and so on.
Some of these operations require additional memory to store intermediate results, and all of them involve additional overhead of calling the kernel, and passing values to and from the device memory.
Reikna porvides an API to define such transformations and attach them to “core” computations, effectively compiling the transformation code into the main kernel(s), thus avoiding all these drawbacks.
Transformation tree¶
Before talking about transformations themselves, we need to take a closer look at the computation signatures.
Every Computation object has a signature attribute containing funcsigs.Signature object.
It is the same signature object as can be exctracted from any Python function using funcsigs.signature function (or inspect.signature from the standard library for Python >= 3.3).
When the computation object is compiled, the resulting callable will have this exact signature.
The base signature for any computation can be found in its documentation (and, sometimes, can depend on the arguments passed to its constructor — see, for example, PureParallel).
The signature can change if a user connects transformations to some parameter via connect(); in this case the signature attribute will change accordingly.
All attached transformations form a tree with roots being the base parameters computation has right after creation, and leaves forming the user-visible signature, which the compiled ComputationCallable will have.
As an example, let us consider a pure parallel computation object with one output, two inputs and a scalar parameter, which performs the calculation out = in1 + in2 + param:
from __future__ import print_function
import numpy
from reikna import cluda
from reikna.cluda import Snippet
from reikna.core import Transformation, Type, Annotation, Parameter
from reikna.algorithms import PureParallel
import reikna.transformations as transformations
arr_t = Type(numpy.float32, shape=128)
carr_t = Type(numpy.complex64, shape=128)
comp = PureParallel(
[Parameter('out', Annotation(carr_t, 'o')),
Parameter('in1', Annotation(carr_t, 'i')),
Parameter('in2', Annotation(carr_t, 'i')),
Parameter('param', Annotation(numpy.float32))],
"""
VSIZE_T idx = ${idxs[0]};
${out.store_idx}(
idx, ${in1.load_idx}(idx) + ${in2.load_idx}(idx) + ${param});
""")
The details of creating the computation itself are not important for this example; they are provided here just for the sake of completeness.
The initial transformation tree of comp object looks like:
| out | >>
>> | in1 |
>> | in2 |
>> | param |
Here the insides of || are the base computation (the one defined by the developer), and >> denote inputs and outputs provided by the user.
The computation signature is:
>>> for param in comp.signature.parameters.values():
... print(param.name + ":" + repr(param.annotation))
out:Annotation(Type(complex64, shape=(128,), strides=(8,)), role='o')
in1:Annotation(Type(complex64, shape=(128,), strides=(8,)), role='i')
in2:Annotation(Type(complex64, shape=(128,), strides=(8,)), role='i')
param:Annotation(float32)
Now let us attach the transformation to the output which will split it into two halves: out1 = out / 2, out2 = out / 2:
tr = transformations.split_complex(comp.parameter.out)
comp.parameter.out.connect(tr, tr.input, out1=tr.real, out2=tr.imag)
We have used the pre-created transformation here for simplicity; writing custom transformations is described in Writing a transformation.
In addition, we want in2 to be scaled before being passed to the main computation.
To achieve this, we connect the scaling transformation to it:
tr = transformations.mul_param(comp.parameter.in2, numpy.float32)
comp.parameter.in2.connect(tr, tr.output, in2_prime=tr.input, param2=tr.param)
The transformation tree now looks like:
| out | ----> out1 >>
| | \-> out2 >>
>> | in1 |
>> in2_prime ------> | in2 |
>> param2 ----/ | |
| param |
As can be seen, nothing has changed from the base computation’s point of view: it still gets the same inputs and outputs to the same array.
But user-supplied parameters (>>) have changed, which can be also seen in the value of the signature:
>>> for param in comp.signature.parameters.values():
... print(param.name + ":" + repr(param.annotation))
out1:Annotation(Type(float32, shape=(128,), strides=(4,)), role='o')
out2:Annotation(Type(float32, shape=(128,), strides=(4,)), role='o')
in1:Annotation(Type(complex64, shape=(128,), strides=(8,)), role='i')
in2_prime:Annotation(Type(complex64, shape=(128,), strides=(8,)), role='i')
param2:Annotation(float32)
param:Annotation(float32)
Notice that the order of the final signature is obtained by traversing the transformation tree depth-first, starting from the base parameters.
For more details see the note in the documentation for connect().
The resulting computation returns the value in1 + (in2_prime * param2) + param split in half.
In order to run it, we have to compile it first.
When prepare_for is called, the data types and shapes of the given arguments will be propagated to the roots and used to prepare the original computation.
api = cluda.ocl_api()
thr = api.Thread.create()
in1_t = comp.parameter.in1
in2p_t = comp.parameter.in2_prime
out1 = thr.empty_like(comp.parameter.out1)
out2 = thr.empty_like(comp.parameter.out2)
in1 = thr.to_device(numpy.ones(in1_t.shape, in1_t.dtype))
in2_prime = thr.to_device(numpy.ones(in2p_t.shape, in2p_t.dtype))
c_comp = comp.compile(thr)
c_comp(out1, out2, in1, in2_prime, 4, 3)
Transformation restrictions¶
There are some limitations of the transformation mechanics:
- Transformations are purely parallel, that is they cannot use local memory.
In fact, they are very much like
PureParallelcomputations, except that the indices they use are defined by the main computation, and not set by the GPU driver. - External endpoints of the output transformations cannot point to existing nodes in the transformation tree. This is the direct consequence of the first limitation — it would unavoidably create races between memory writes from different branches. On the other hand, input transformations can be safely connected to existing nodes, including base nodes (although note that inputs are not cached; so even if you load twice from the same index of the same input node, the global memory will be queried twice).
Tutorial: advanced topics¶
This tutorial goes into more detail about the internals of computations and transformations, describing how to write them.
Mako basics¶
Reikna uses Mako extensively as a templating engine for transformations and computations.
For the purpose of this tutorial you only need to know several things about the synthax:
- Most of Mako synthax is plain Python, with the set of global variables specified externally by the code doing the template rendering
${expr}evaluates Python expressionexpr, callsstr()on the result and puts it into the text- a pair of
<%and%>executes Python code inside, which may introduce some local variables - a pair of
<%def name="func(a, b)">and</%def>defines a template function, which actually becomes a Python function which can be called asfunc(a, b)from the other part of the template and returns a rendered string
Writing a transformation¶
Some common transformations are already available from transformations module.
But you can create a custom one if you need to.
Transformations are based on the class Transformation, and are very similar to PureParallel instances, with some additional limitations.
Let us consider a (not very useful, but quite involved) example:
tr = Transformation(
[
Parameter('out1', Annotation(Type(numpy.float32, shape=100), 'o')),
Parameter('out2', Annotation(Type(numpy.float32, shape=80), 'o')),
Parameter('in1', Annotation(Type(numpy.float32, shape=100), 'i')),
Parameter('in2', Annotation(Type(numpy.float32, shape=100), 'i')),
Parameter('param', Annotation(Type(numpy.float32))),
],
"""
VSIZE_T idx = ${idxs[0]};
float i1 = ${in1.load_same};
float i2 = ${in2.load_idx}(100 - idx) * ${param};
${out1.store_same}(i1);
if (idx < 80)
${out2.store_same}(i2);
""",
connectors=['in1', 'out1'])
Connectors. A transformation gets activated when the main computation attempts to load some value from some index in global memory, or store one to some index. This index is passed to the transformation attached to the corresponding parameter, and used to invoke loads/stores either without changes (to perform strictly elementwise operations), or, possibly, with some changes (as the example illustrates).
If some parameter is only queried once, and only using load_same or store_same, it is called a connector, which means that it can be used to attach the transformation to a computation.
Currently connectors cannot be detected automatically, so it is the responsibility of the user to provide a list of them to the constructor.
By default all parameters are considered to be connectors.
Shape changing.
Parameters in transformations are typed, and it is possible to change data type or shape of a parameter the transformation is attached to.
In our example out2 has length 80, so the current index is checked before the output to make sure there is no out of bounds access.
Parameter objects.
The transformation example above has some hardcoded stuff, for example the type of parameters (float), or their shapes (100 and 80).
These can be accessed from argument objects out1, in1 etc; they all have the type KernelParameter.
In addition, the transformation code gets an Indices object with the name idxs, which allows one to manipulate index names directly.
Writing a computation¶
A computation must derive Computation.
As an example, let us create a computation which calculates output = input1 + input2 * param.
Defining a class:
import numpy
from reikna.helpers import *
from reikna.core import *
class TestComputation(Computation):
Each computation class has to define the constructor, and the plan building callback.
Constructor.
Computation constructor takes a list of computation parameters, which the deriving class constructor has to create according to arguments passed to it.
You will often need Type objects, which can be extracted from arrays, scalars or other Type objects with the help of from_value() (or they can be passed straight to Annotation) which does the same thing.
def __init__(self, arr, coeff):
assert len(arr.shape) == 1
Computation.__init__(self, [
Parameter('output', Annotation(arr, 'o')),
Parameter('input1', Annotation(arr, 'i')),
Parameter('input2', Annotation(arr, 'i')),
Parameter('param', Annotation(coeff))])
In addition to that, the constructor can create some internal state which will be used by the plan builder.
Plan builder. The second method is called when the computation is being compiled, and has to fill and return the computation plan — a sequence of kernel calls, plus maybe some temporary or persistent internal allocations its kernels use. In addition, the plan can include calls to nested computations.
The method takes two predefined positional parameters, plus KernelArgument objects corresponding to computation parameters.
The plan_factory is a callable that creates a new ComputationPlan object (in some cases you may want to recreate the plan, for example, if the workgroup size you were using turned out to be too big), and device_params is a DeviceParameters object, which is used to optimize the computation for the specific device.
The method must return a filled ComputationPlan object.
For our example we only need one action, which is the execution of an elementwise kernel:
def _build_plan(self, plan_factory, device_params, output, input1, input2, param):
plan = plan_factory()
template = template_from(
"""
<%def name='testcomp(kernel_declaration, k_output, k_input1, k_input2, k_param)'>
${kernel_declaration}
{
VIRTUAL_SKIP_THREADS;
const VSIZE_T idx = virtual_global_id(0);
${k_output.ctype} result =
${k_input1.load_idx}(idx) +
${mul}(${k_input2.load_idx}(idx), ${k_param});
${k_output.store_idx}(idx, result);
}
</%def>
""")
plan.kernel_call(
template.get_def('testcomp'),
[output, input1, input2, param],
global_size=output.shape,
render_kwds=dict(mul=functions.mul(input2.dtype, param.dtype)))
return plan
Every kernel call is based on the separate Mako template def.
The template can be specified as a string using template_def(), or loaded as a separate file.
Usual pattern in this case is to call the template file same as the file where the computation class is defined (for example, testcomp.mako for testcomp.py), and store it in some variable on module load using template_for() as TEMPLATE = template_for(__file__).
The template function should take the same number of positional arguments as the kernel plus one; you can view <%def ... > part as an actual kernel definition, but with the arguments being KernelParameter objects containing parameter metadata.
The first argument will contain the string with the kernel declaration.
Also, depending on whether the corresponding argument is an output array, an input array or a scalar parameter, the object can be used as ${obj.store_idx}(index, val), ${obj.load_idx}(index) or ${obj}.
This will produce the corresponding request to the global memory or kernel arguments.
If you need additional device functions, they have to be specified between <%def ... > and ${kernel_declaration}.
Obviously, these functions can still use dtype and ctype object properties, although store_idx and load_idx will most likely result in compilation error (since they are rendered as macros using main kernel arguments).
Since kernel call parameters (global_size and local_size) are specified on creation, all kernel calls are rendered as CLUDA static kernels (see compile_static()) and therefore can use all the corresponding macros and functions (like virtual_global_flat_id() in our kernel).
Also, they must have VIRTUAL_SKIP_THREADS at the beginning of the kernel which remainder threads (which can be present, for example, if the workgroup size is not a multiple of the global size).
API reference¶
Version queries¶
This module contains information about the library version.
-
reikna.version.version¶ A tuple with version numbers, major components first.
-
reikna.version.full_version¶ A string fully identifying the current build.
-
reikna.version.git_revision¶ A string with Git SHA identifying the revision used to create this build.
-
reikna.version.release¶ A boolean variable, equals
Trueif current version is a release version.
Helpers¶
This module contains various auxiliary functions which are used throughout the library.
-
reikna.helpers.bounding_power_of_2(num)¶ Returns the minimal number of the form
2**msuch that it is greater or equal ton.
-
reikna.helpers.default_strides(shape, itemsize)¶ Return the default strides (corresponding to a contiguous array) for an array of shape
shapeand elements of sizeitemsizebytes.
-
reikna.helpers.factors(num, limit=None)¶ Returns the list of pairs
(factor, num/factor)for all factors ofnum(including 1 andnum), sorted byfactor. Iflimitis set, only pairs withfactor <= limitare returned.
-
class
reikna.helpers.ignore_integer_overflow¶ Context manager for ignoring integer overflow in numpy operations on scalars (not ignored by default because of a bug in numpy).
-
reikna.helpers.log2(num)¶ Integer-valued logarigthm with base 2. If
nis not a power of 2, the result is rounded to the smallest number.
-
reikna.helpers.make_axes_innermost(ndim, axes)¶ Given the total number of array axes and a list of axes in this range, produce a transposition plan (suitable e.g. for
numpy.transpose()) that will move make the given axes innermost (in the order they’re given). Returns the transposition plan, and the plan to transpose the resulting array back to the original axes order.
-
reikna.helpers.min_blocks(length, block)¶ Returns minimum number of blocks with length
blocknecessary to cover the array with lengthlength.
-
reikna.helpers.min_buffer_size(shape, itemsize, strides=None, offset=0)¶ Return the minimum memory buffer size (in bytes) that can fit an array with given parameters, starting at an
offsetbytes from the beginning of the buffer.
-
reikna.helpers.normalize_axes(ndim, axes)¶ Transform an iterable of array axes (which can be negative) or a single axis into a tuple of non-negative axes.
-
reikna.helpers.padded_buffer_parameters(shape, itemsize, pad=0)¶ For an array of shape
shape, padded from all sizes withpadelements, return a tuple of (strides, offset, size (in bytes) of the required memory buffer), which would have to be requested when allocating such an array.
-
reikna.helpers.product(seq)¶ Returns the product of elements in the iterable
seq.
-
reikna.helpers.template_def(signature, code)¶ Returns a
Makotemplate with the givensignature.Parameters: signature – a list of postitional argument names, or a Signatureobject fromfuncsigsmodule.Code: a body of the template.
-
reikna.helpers.template_for(filename)¶ Returns the Mako template object created from the file which has the same name as
filenameand the extension.mako. Typically used in computation modules astemplate_for(__filename__).
-
reikna.helpers.template_from(template)¶ Creates a Mako template object from a given string. If
templatealready hasrender()method, does nothing.
-
reikna.helpers.wrap_in_tuple(seq_or_elem)¶ If
seq_or_elemis a sequence, converts it to atuple, otherwise returns a tuple with a single elementseq_or_elem.
CLUDA layer¶
CLUDA is the foundation of reikna.
It provides the unified access to basic features of CUDA and OpenCL, such as memory operations, compilation and so on.
It can also be used by itself, if you want to write GPU API-independent programs and happen to only need a small subset of GPU API.
The terminology is borrowed from OpenCL, since it is a more general API.
-
class
reikna.cluda.Module(template_src, render_kwds=None)¶ Contains a CLUDA module. See Tutorial: modules and snippets for details.
Parameters: - template_src (
strorMakotemplate.) – aMakotemplate with the module code, or a string with the template source. - render_kwds – a dictionary which will be used to render the template. Can contain other modules and snippets.
-
classmethod
create(func_or_str, render_kwds=None)¶ Creates a module from the
Makodef:- if
func_or_stris a function, then the def has the same signature asfunc_or_str(prefix will be passed as the first positional parameter), and the body equal to the string it returns; - if
func_or_stris a string, then the def has a single positional argumentprefix. and the bodycode.
- if
- template_src (
-
exception
reikna.cluda.OutOfResourcesError¶ Thrown by
compile_static()if the providedlocal_sizeis too big, or one cannot be found.
-
class
reikna.cluda.Snippet(template_src, render_kwds=None)¶ Contains a CLUDA snippet. See Tutorial: modules and snippets for details.
Parameters: - template_src (
strorMakotemplate.) – aMakotemplate with the module code, or a string with the template source. - render_kwds – a dictionary which will be used to render the template. Can contain other modules and snippets.
-
classmethod
create(func_or_str, render_kwds=None)¶ Creates a snippet from the
Makodef:- if
func_or_stris a function, then the def has the same signature asfunc_or_str, and the body equal to the string it returns; - if
func_or_stris a string, then the def has empty signature.
- if
- template_src (
-
reikna.cluda.any_api()¶ Returns one of the API modules supported by the system or raises an
Exceptionif there are not any.
-
reikna.cluda.api_ids()¶ Returns a list of identifiers for all known (not necessarily available for the current system) APIs.
-
reikna.cluda.cuda_api()¶ Returns the
PyCUDA-based API module.
-
reikna.cluda.cuda_id()¶ Returns the identifier of the
PyCUDA-based API.
-
reikna.cluda.find_devices(api, include_devices=None, exclude_devices=None, include_platforms=None, exclude_platforms=None, include_duplicate_devices=True, include_pure_only=False)¶ Find platforms and devices meeting certain criteria.
Parameters: - api – a CLUDA API object.
- include_devices – a list of masks for a device name which will be used to pick devices to include in the result.
- exclude_devices – a list of masks for a device name which will be used to pick devices to exclude from the result.
- include_platforms – a list of masks for a platform name which will be used to pick platforms to include in the result.
- exclude_platforms – a list of masks for a platform name which will be used to pick platforms to exclude in the result.
- include_duplicate_devices – if
False, will only include a single device from the several with the same name available on a platform. - include_pure_only – if
True, will include devices with maximum group size equal to 1.
Returns: a dictionary with found platform numbers as keys, and lists of device numbers as values.
-
reikna.cluda.get_api(api_id)¶ Returns an API module with the generalized interface
reikna.cluda.apifor the given identifier.
-
reikna.cluda.ocl_api()¶ Returns the
PyOpenCL-based API module.
-
reikna.cluda.ocl_id()¶ Returns the identifier of the
PyOpenCL-based API.
-
reikna.cluda.supported_api_ids()¶ Returns a list of identifiers of supported APIs.
-
reikna.cluda.supports_api(api_id)¶ Returns
Trueif given API is supported.
API module¶
Modules for all APIs have the same generalized interface.
It is referred here (and references from other parts of this documentation) as reikna.cluda.api.
-
class
reikna.cluda.api.Buffer¶ Low-level untyped memory allocation. Actual class depends on the API:
pycuda.driver.DeviceAllocationforCUDAandpyopencl.BufferforOpenCL.-
size¶
-
-
class
reikna.cluda.api.Array¶ A superclass of the corresponding API’s native array (
pycuda.gpuarray.GPUArrayforCUDAandpyopencl.array.ArrayforOpenCL), with some additional functionality.-
shape¶
-
dtype¶
-
strides¶
-
offset¶ The start of the array data in the memory buffer (in bytes).
-
base_data¶ The memory buffer where the array is located.
-
nbytes¶ The total size of the array data plus the offset (in bytes).
-
-
class
reikna.cluda.api.DeviceParameters(device)¶ An assembly of device parameters necessary for optimizations.
-
api_id¶ Identifier of the API this device belongs to.
-
max_work_group_size¶ Maximum block size for kernels.
-
max_work_item_sizes¶ List with maximum local_size for each dimension.
-
max_num_groups¶ List with maximum number of workgroups for each dimension.
-
warp_size¶ Warp size (nVidia), or wavefront size (AMD), or SIMD width is supposed to be the number of threads that are executed simultaneously on the same computation unit (so you can assume that they are perfectly synchronized).
-
local_mem_banks¶ Number of local (shared in CUDA) memory banks is a number of successive 32-bit words you can access without getting bank conflicts.
-
local_mem_size¶ Size of the local (shared in CUDA) memory per workgroup, in bytes.
-
min_mem_coalesce_width¶ Dictionary
{word_size:elements}, whereelementsis the number of elements with sizeword_sizein global memory that allow coalesced access.
-
supports_dtype(self, dtype)¶ Checks if given
numpydtype can be used in kernels compiled using this thread.
-
-
class
reikna.cluda.api.Platform¶ A vendor-specific implementation of the GPGPU API.
-
name¶ Platform name.
-
vendor¶ Vendor name.
-
version¶ Platform version.
-
get_devices()¶ Returns a list of device objects available in the platform.
-
-
class
reikna.cluda.api.Kernel(thr, program, name, static=False)¶ An object containing GPU kernel.
-
max_work_group_size¶ Maximum size of the work group for the kernel.
-
__call__(*args, **kwds)¶ A shortcut for successive call to
prepare()andprepared_call(). In case of the OpenCL backend, returns apyopencl.Eventobject.
-
prepare(global_size, local_size=None, local_mem=0)¶ Prepare the kernel for execution with given parameters.
Parameters: - global_size – an integer or a tuple of integers, specifying total number of work items to run.
- local_size – an integer or a tuple of integers,
specifying the size of a single work group.
Should have the same number of dimensions as
global_size. IfNoneis passed, somelocal_sizewill be picked internally. - local_mem – (CUDA API only) amount of dynamic local memory (in bytes)
-
-
class
reikna.cluda.api.Program(thr, src, static=False, fast_math=False, compiler_options=None, constant_arrays=None, keep=False)¶ An object with compiled GPU code.
-
source¶ Contains module source code.
-
-
class
reikna.cluda.api.StaticKernel(thr, template_src, name, global_size, local_size=None, render_args=None, render_kwds=None, fast_math=False, compiler_options=None, constant_arrays=None, keep=False)¶ An object containing a GPU kernel with fixed call sizes.
-
source¶ Contains the source code of the program.
-
-
class
reikna.cluda.api.Thread(cqd, async_=True, temp_alloc=None)¶ Wraps an existing context in the CLUDA thread object.
Parameters: - cqd – a
Context,DeviceorStream/CommandQueueobject to base on. If a context is passed, a new stream/queue will be created internally. - async – whether to execute all operations with this thread asynchronously
(you would generally want to set it to
Falseonly for profiling purposes).
Note
If you are using
CUDAAPI, you must keep in mind the stateful nature of CUDA calls. Briefly, this means that there is the context stack, and the current context on top of it. When thecreate()is called, thePyCUDAcontext gets pushed to the stack and made current. When the thread object goes out of scope (and the thread object owns it), the context is popped, and it is the user’s responsibility to make sure the popped context is the correct one. In simple single-context programs this only means that one should avoid reference cycles involving the thread object.Warning
Do not pass one
Stream/CommandQueueobject to severalThreadobjects.-
api¶ Module object representing the CLUDA API corresponding to this
Thread.
-
device_params¶ Instance of
DeviceParametersclass for this thread’s device.
-
temp_alloc¶ Instance of
TemporaryManagerwhich handles allocations of temporary arrays (seetemp_array()).
-
array(shape, dtype, strides=None, offset=0, nbytes=None, base=None, base_data=None, allocator=None)¶ Creates an
Arrayon GPU with givenshape,dtype,stridesandoffset.If
nbytesisNone, the size of the allocated memory buffer is chosen to be the minimum one to fit all the elements of the array, based onshape,dtypeandstrides(if provided). Ifoffsetis not 0, an additionaloffsetbytes is added at the beginning of the buffer.Note
Reikna computations (including the template functions
load_idx(),store_idx()etc), high-level PyCUDA/PyOpenCL functions and PyCUDA kernels takeoffsetinto account automatically and address arrays starting from the position of the actual data. Reikna kernels (created withcompile()andcompile_static()) and PyOpenCL kernels receive base addresses of arrays, and thus have to add offsets manually.If
base,base_dataandnbytesareNone, the total allocated size will be the minimum size required for the array data (based onshapeandstrides) plusoffset.If
baseandbase_dataareNone, butnbytesis not,nbytesbytes will be allocated for the array (this includes the offset).If
base_data(a memory buffer) is notNone, it will be used as the underlying buffer for the array, with the actual data starting at theoffsetbytes from the beginning ofbase_data. No size checking to make sure the array and the offset fit it will be performed.If
base(anArrayobject) is notNone, its buffer is used as the underlying buffer for the array, with the actual data starting at theoffsetbytes from the beginning ofbase.base_data.base_datawill be ignored.Optionally, an
allocatoris a callable returning any object castable tointrepresenting the physical address on the device (for instance,Buffer).
-
compile(template_src, render_args=None, render_kwds=None, fast_math=False, compiler_options=None, constant_arrays=None, keep=False)¶ Creates a module object from the given template.
Parameters: - template_src – Mako template source to render
- render_args – an iterable with positional arguments to pass to the template.
- render_kwds – a dictionary with keyword parameters to pass to the template.
- fast_math – whether to enable fast mathematical operations during compilation.
- compiler_options – a list of strings to be passed to the compiler as arguments.
- constant_arrays – (CUDA only) a dictionary
{name: metadata}of constant memory arrays to be declared in the compiled program.metadatacan be either an array-like object (possessingshapeanddtypeattributes), or a pair(shape, dtype). - keep – if True, preserve the source file being compiled
and the accompanying binaries (if any).
With PyCUDA backend, it is used as the
keepoption when creatingSourceModule. With PyOpenCL backend, it is used as thecache_diroption forProgram.build()(and, additionally, the kernel source itself is put there).
Returns: a
Programobject.
-
compile_static(template_src, name, global_size, local_size=None, render_args=None, render_kwds=None, fast_math=False, compiler_options=None, constant_arrays=None, keep=False)¶ Creates a kernel object with fixed call sizes, which allows to overcome some backend limitations. Global and local sizes can have any length, providing that
len(global_size) >= len(local_size), and the total number of work items and work groups is less than the corresponding total number available for the device. In order to get IDs and sizes in such kernels, virtual size functions have to be used (seeVIRTUAL_SKIP_THREADSand others for details).Parameters: - template_src – Mako template or a template source to render
- name – name of the kernel function
- global_size – global size to be used, in row-major order.
- local_size – local size to be used, in row-major order.
If
None, some suitable one will be picked. - local_mem – (CUDA API only) amount of dynamically allocated local memory to be used (in bytes).
The rest of the keyword parameters are the same as for
compile().Returns: a StaticKernelobject.
-
copy_array(arr, dest=None, src_offset=0, dest_offset=0, size=None)¶ Copies array on device.
Parameters: - dest – the effect is the same as in
to_device(). - src_offset – offset (in items of
arr.dtype) in the source array. - dest_offset – offset (in items of
arr.dtype) in the destination array. - size – how many elements of
arr.dtypeto copy.
- dest – the effect is the same as in
-
classmethod
create(interactive=False, device_filters=None, **thread_kwds)¶ Creates a new
Threadobject with its own context and queue inside. Intended for cases when you want to base your whole program on CLUDA.Parameters: - interactive – ask a user to choose a platform and a device from the ones found. If there is only one platform/device available, they will be chosen automatically.
- device_filters – keywords to filter devices
(see the keywords for
find_devices()). - thread_kwds – keywords to pass to
Threadconstructor. - kwds – same as in
Thread.
-
empty_like(arr)¶ Allocates an array on GPU with the same attributes (
shape,dtype,strides,offsetandnbytes) asarr.Warning
Note that
pycuda.GPUArrayobjects do not have theoffsetattribute.
-
from_device(arr, dest=None, async_=False)¶ Transfers the contents of
arrto anumpy.ndarrayobject. The effect ofdestparameter is the same as into_device(). Ifasync_isTrue, the transfer is asynchronous (the thread-wide asynchronisity setting does not apply here).Alternatively, one can use
Array.get().
-
release()¶ Forcefully free critical resources (rendering the object unusable). In most cases you can rely on the garbage collector taking care of things. Calling this method explicitly may be necessary in case of CUDA API when you want to make sure the context got popped.
-
synchronize()¶ Forcefully synchronize this thread with the main program.
-
temp_array(shape, dtype, strides=None, offset=0, nbytes=None, dependencies=None)¶ Creates an
Arrayon GPU with givenshape,dtype,strides,offsetandnbytes(seearray()for details). In order to reduce the memory footprint of the program, the temporary array manager will allow these arrays to overlap. Two arrays will not overlap, if one of them was specified independenciesfor the other one. For a list of valuesdependenciestakes, see the reference entry forTemporaryManager.
-
to_device(arr, dest=None)¶ Copies an array to the device memory. If
destis specified, it is used as the destination, and the method returnsNone. Otherwise the destination array is created internally and returned from the method.
- cqd – a
-
reikna.cluda.api.get_id()¶ Returns the identifier of this API.
Temporary Arrays¶
Each Thread contains a special allocator for arrays with data that does not have to be persistent all the time.
In many cases you only want some array to keep its contents between several kernel calls.
This can be achieved by manually allocating and deallocating such arrays every time, but it slows the program down, and you have to synchronize the queue because allocation commands are not serialized.
Therefore it is advantageous to use temp_array() method to get such arrays.
It takes a list of dependencies as an optional parameter which gives the allocator a hint about which arrays should not use the same physical allocation.
-
class
reikna.cluda.tempalloc.TemporaryManager(thr, pack_on_alloc=False, pack_on_free=False)¶ Base class for a manager of temporary allocations.
Parameters: - thr – an instance of
Thread. - pack_on_alloc – whether to repack allocations when a new allocation is requested.
- pack_on_free – whether to repack allocations when an allocation is freed.
-
array(shape, dtype, strides=None, offset=0, nbytes=None, dependencies=None)¶ Returns a temporary array.
Parameters: - shape – shape of the array.
- dtype – data type of the array.
- strides – tuple of bytes to step in each dimension when traversing an array.
- offset – the array offset (in bytes)
- nbytes – the buffer size for the array
(if
None, the minimum required size will be used). - dependencies – can be a
Arrayinstance (the ones containing persistent allocations will be ignored), an iterable with valid values, or an object with the attribute __tempalloc__ which is a valid value (the last two will be processed recursively).
-
pack()¶ Packs the real allocations possibly reducing total memory usage. This process can be slow.
- thr – an instance of
-
class
reikna.cluda.tempalloc.TrivialManager(*args, **kwds)¶ Trivial manager — allocates a separate buffer for each allocation request.
-
class
reikna.cluda.tempalloc.ZeroOffsetManager(*args, **kwds)¶ Tries to assign several allocation requests to a single real allocation, if dependencies allow that. All virtual allocations start from the beginning of real allocations.
Function modules¶
This module contains Module factories
which are used to compensate for the lack of complex number operations in OpenCL,
and the lack of C++ synthax which would allow one to write them.
-
reikna.cluda.functions.add(*in_dtypes, out_dtype=None)¶ Returns a
Modulewith a function oflen(in_dtypes)arguments that adds values of typesin_dtypes. Ifout_dtypeis given, it will be set as a return type for this function.This is necessary since on some platforms the
+operator for a complex and a real number works in an unexpected way (returning(a.x + b, a.y + b)instead of(a.x + b, a.y)).
-
reikna.cluda.functions.cast(out_dtype, in_dtype)¶ Returns a
Modulewith a function of one argument that casts values ofin_dtypetoout_dtype.
-
reikna.cluda.functions.conj(dtype)¶ Returns a
Modulewith a function of one argument that conjugates the value of typedtype(must be a complex data type).
-
reikna.cluda.functions.div(in_dtype1, in_dtype2, out_dtype=None)¶ Returns a
Modulewith a function of two arguments that divides values ofin_dtype1andin_dtype2. Ifout_dtypeis given, it will be set as a return type for this function.
-
reikna.cluda.functions.exp(dtype)¶ Returns a
Modulewith a function of one argument that exponentiates the value of typedtype(must be a real or complex data type).
-
reikna.cluda.functions.mul(*in_dtypes, out_dtype=None)¶ Returns a
Modulewith a function oflen(in_dtypes)arguments that multiplies values of typesin_dtypes. Ifout_dtypeis given, it will be set as a return type for this function.
-
reikna.cluda.functions.norm(dtype)¶ Returns a
Modulewith a function of one argument that returns the 2-norm of the value of typedtype(product by the complex conjugate if the value is complex, square otherwise).
-
reikna.cluda.functions.polar(dtype)¶ Returns a
Modulewith a function of two arguments that returns the complex-valuedrho * exp(i * theta)for valuesrho, thetaof typedtype(must be a real data type).
-
reikna.cluda.functions.polar_unit(dtype)¶ Returns a
Modulewith a function of one argument that returns a complex number(cos(theta), sin(theta))for a valuethetaof typedtype(must be a real data type).
-
reikna.cluda.functions.pow(dtype, exponent_dtype=None, output_dtype=None)¶ Returns a
Modulewith a function of two arguments that raises the first argument of typedtypeto the power of the second argument of typeexponent_dtype(an integer or real data type). Ifexponent_dtypeoroutput_dtypeare not given, they default todtype. Ifdtypeis not the same asoutput_dtype, the input is cast tooutput_dtypebefore exponentiation. Ifexponent_dtypeis real, but bothdtypeandoutput_dtypeare integer, aValueErroris raised.
Kernel toolbox¶
The stuff available for the kernel passed for compilation consists of two parts.
First, there are several objects available at the template rendering stage, namely numpy, reikna.cluda.dtypes (as dtypes), and reikna.helpers (as helpers).
Second, there is a set of macros attached to any kernel depending on the API it is being compiled for:
-
CUDA¶ If defined, specifies that the kernel is being compiled for CUDA API.
-
COMPILE_FAST_MATH¶ If defined, specifies that the compilation for this kernel was requested with
fast_math == True.
-
LOCAL_BARRIER¶ Synchronizes threads inside a block.
-
WITHIN_KERNEL¶ Modifier for a device-only function declaration.
-
KERNEL¶ Modifier for a kernel function declaration.
-
GLOBAL_MEM¶ Modifier for a global memory pointer argument.
-
LOCAL_MEM¶ Modifier for a statically allocated local memory variable.
-
LOCAL_MEM_DYNAMIC¶ Modifier for a dynamically allocated local memory variable.
-
LOCAL_MEM_ARG¶ Modifier for a local memory argument in device-only functions.
-
CONSTANT_MEM¶ Modifier for a statically allocated constant memory variable.
-
CONSTANT_MEM_ARG¶ Modifier for a constant memory argument in device-only functions.
-
INLINE¶ Modifier for inline functions.
-
SIZE_T¶ The type of local/global IDs and sizes. Equal to
unsigned intfor CUDA, andsize_tfor OpenCL (which can be 32- or 64-bit unsigned integer, depending on the device).
-
SIZE_T
get_global_size(int dim)¶ Local, group and global identifiers and sizes. In case of CUDA mimic the behavior of corresponding OpenCL functions.
-
VSIZE_T¶ The type of local/global IDs in the virtual grid. It is separate from
SIZE_Tbecause the former is intended to be equivalent to what the backend is using, whileVSIZE_Tis a separate type and can be made larger thanSIZE_Tin the future if necessary.
-
ALIGN(int)¶ Used to specify an explicit alignment (in bytes) for fields in structures, as
typedef struct { char ALIGN(4) a; int b; } MY_STRUCT;
-
VIRTUAL_SKIP_THREADS¶ This macro should start any kernel compiled with
compile_static(). It skips all the empty threads resulting from fitting call parameters into backend limitations.
-
VSIZE_T
virtual_global_flat_size()¶ Only available in
StaticKernelobjects obtained fromcompile_static(). Since its dimensions can differ from actual call dimensions, these functions have to be used.
Datatype tools¶
This module contains various convenience functions which operate with numpy.dtype objects.
-
reikna.cluda.dtypes.align(dtype)¶ Returns a new struct dtype with the field offsets changed to the ones a compiler would use (without being given any explicit alignment qualifiers). Ignores all existing explicit itemsizes and offsets.
-
reikna.cluda.dtypes.c_constant(val, dtype=None)¶ Returns a C-style numerical constant. If
valhas a struct dtype, the generated constant will have the form{ ... }and can be used as an initializer for a variable.
-
reikna.cluda.dtypes.c_path(path)¶ Returns a string corresponding to the
pathto a struct element in C. Thepathis the sequence of field names/array indices returned fromflatten_dtype().
-
reikna.cluda.dtypes.cast(dtype)¶ Returns function that takes one argument and casts it to
dtype.
-
reikna.cluda.dtypes.complex_ctr(dtype)¶ Returns name of the constructor for the given
dtype.
-
reikna.cluda.dtypes.complex_for(dtype)¶ Returns complex dtype corresponding to given floating point
dtype.
-
reikna.cluda.dtypes.ctype(dtype)¶ For a built-in C type, returns a string with the name of the type.
-
reikna.cluda.dtypes.ctype_module(dtype, ignore_alignment=False)¶ For a struct type, returns a
Moduleobject with thetypedefof a struct corresponding to the givendtype(with its name set to the module prefix); falls back toctype()otherwise.The structure definition includes the alignment required to produce field offsets specified in
dtype; therefore,dtypemust be either a simple type, or have proper offsets and dtypes (the ones that can be reporoduced in C using explicit alignment attributes, but without additional padding) and the attributeisalignedstruct == True. An aligned dtype can be produced either by standard means (alignedflag innumpy.dtypeconstructor and explicit offsets and itemsizes), or created out of an arbitrary dtype with the help ofalign().If
ignore_alignmentis True, all of the above is ignored. The C structures produced will not have any explicit alignment modifiers. As a result, the the field offsets ofdtypemay differ from the ones chosen by the compiler.Modules are cached and the function returns a single module instance for equal
dtype’s. Therefore inside a kernel it will be rendered with the same prefix everywhere it is used. This results in a behavior characteristic for a structural type system, same as for the basic dtype-ctype conversion.Warning
As of
numpy1.8, theisalignedstructattribute is not enough to ensure a mapping between a dtype and a C struct with only the fields that are present in the dtype. Therefore,ctype_modulewill make some additional checks and raiseValueErrorif it is not the case.
-
reikna.cluda.dtypes.detect_type(val)¶ Find out the data type of
val.
-
reikna.cluda.dtypes.extract_field(arr, path)¶ Extracts an element from an array of struct dtype. The
pathis the sequence of field names/array indices returned fromflatten_dtype().
-
reikna.cluda.dtypes.flatten_dtype(dtype)¶ Returns a list of tuples
(path, dtype)for each of the basic dtypes in a (possibly nested)dtype.pathis a list of field names/array indices leading to the corresponding element.
-
reikna.cluda.dtypes.is_complex(dtype)¶ Returns
Trueifdtypeis complex.
-
reikna.cluda.dtypes.is_double(dtype)¶ Returns
Trueifdtypeis double precision floating point.
-
reikna.cluda.dtypes.is_integer(dtype)¶ Returns
Trueifdtypeis an integer.
-
reikna.cluda.dtypes.is_real(dtype)¶ Returns
Trueifdtypeis a real.
-
reikna.cluda.dtypes.min_scalar_type(val)¶ Wrapper for
numpy.min_scalar_dtypewhich takes into account types supported by GPUs.
-
reikna.cluda.dtypes.normalize_type(dtype)¶ Function for wrapping all dtypes coming from the user.
numpyuses two different classes to represent dtypes, and one of them does not have some important attributes.
-
reikna.cluda.dtypes.normalize_types(dtypes)¶ Same as
normalize_type(), but operates on a list of dtypes.
-
reikna.cluda.dtypes.real_for(dtype)¶ Returns floating point dtype corresponding to given complex
dtype.
-
reikna.cluda.dtypes.result_type(*dtypes)¶ Wrapper for
numpy.result_typewhich takes into account types supported by GPUs.
-
reikna.cluda.dtypes.zero_ctr(dtype)¶ Returns the string with constructed zero value for the given
dtype.
Core functionality¶
Classes necessary to create computations and transformations are exposed from the core module.
Computation signatures¶
-
class
reikna.core.Type(dtype, shape=None, strides=None, offset=0, nbytes=None)¶ Represents an array or, as a degenerate case, scalar type of a computation parameter.
-
shape¶ A tuple of integers. Scalars are represented by an empty tuple.
-
dtype¶ A
numpy.dtypeinstance.
-
strides¶ Tuple of bytes to step in each dimension when traversing an array.
-
offset¶ The initial offset (in bytes).
-
nbytes¶ The total size of the memory buffer (in bytes)
-
__call__(val)¶ Casts the given value to this type.
-
-
class
reikna.core.Annotation(type_, role=None, constant=False)¶ Computation parameter annotation, in the same sense as it is used for functions in the standard library.
Parameters: - type – a
Typeobject. - role – any of
'i'(input),'o'(output),'io'(input/output),'s'(scalar). Defaults to's'for scalars,'io'for regular arrays and'i'for constant arrays. - constant – if
True, corresponds to a constant (cached) array.
- type – a
-
class
reikna.core.Parameter(name, annotation, default=<class 'funcsigs._empty'>)¶ Computation parameter, in the same sense as it is used for functions in the standard library. In its terms, all computation parameters have kind
POSITIONAL_OR_KEYWORD.Parameters: - name – parameter name.
- annotation – an
Annotationobject. - default – default value for the parameter, can only be specified for scalars.
-
class
reikna.core.Signature(parameters)¶ Computation signature, in the same sense as it is used for functions in the standard library.
Parameters: parameters – a list of Parameterobjects.-
bind_with_defaults(args, kwds, cast=False)¶ Binds passed positional and keyword arguments to parameters in the signature and returns the resulting
BoundArgumentsobject.
-
Core classes¶
-
class
reikna.core.Computation(root_parameters)¶ A base class for computations, intended to be subclassed.
Parameters: root_parameters – a list of Parameterobjects.-
signature¶ A
Signatureobject representing current computation signature (taking into account connected transformations).
-
parameter¶ A named tuple of
ComputationParameterobjects corresponding to parameters from the currentsignature.
-
_build_plan(plan_factory, device_params, *args)¶ Derived classes override this method. It is called by
compile()and supposed to return aComputationPlanobject.Parameters: - plan_factory – a callable returning a new
ComputationPlanobject. - device_params – a
DeviceParametersobject corresponding to the thread the computation is being compiled for. - args –
KernelArgumentobjects, corresponding toparametersspecified during the creation of this computation object.
- plan_factory – a callable returning a new
-
_update_attributes()¶ Updates
signatureandparameterattributes. Called by the methods that change the signature.
-
compile(thread, fast_math=False, compiler_options=None, keep=False)¶ Compiles the computation with the given
Threadobject and returns aComputationCallableobject. Iffast_mathis enabled, the compilation of all kernels is performed using the compiler options for fast and imprecise mathematical functions.compiler_optionscan be used to pass a list of strings as arguments to the backend compiler. IfkeepisTrue, the generated kernels and binaries will be preserved in temporary directories.
-
connect(_comp_connector, _trf, _tr_connector, **tr_from_comp)¶ Connect a transformation to the computation.
Parameters: - _comp_connector – connection target —
a
ComputationParameterobject belonging to this computation object, or a string with its name. - _trf – a
Transformationobject. - _tr_connector – connector on the side of the transformation —
a
TransformationParameterobject belonging totr, or a string with its name. - tr_from_comp – a dictionary with the names of new or old
computation parameters as keys, and
TransformationParameterobjects (or their names) as values. The keys oftr_from_compcannot include the name of the connection target.
Returns: this computation object (modified).
Note
The resulting parameter order is determined by traversing the graph of connections depth-first (starting from the initial computation parameters), with the additional condition: the nodes do not change their order in the same branching level (i.e. in the list of computation or transformation parameters, both of which are ordered).
For example, consider a computation with parameters
(a, b, c, d). If you connect a transformation(a', c) -> a, the resulting computation will have the signature(a', b, c, d)(as opposed to(a', c, b, d)it would have for the pure depth-first traversal).- _comp_connector – connection target —
a
-
-
class
reikna.core.Transformation(parameters, code, render_kwds=None, connectors=None)¶ A class containing a pure parallel transformation of arrays. Some restrictions apply:
- it cannot use local memory;
- it cannot use global/local id getters (and depends only on externally passed indices);
- it cannot have
'io'arguments; - it has at least one argument that uses
load_sameorstore_same, and does it only once.
Parameters: - parameters – a list of
Parameterobjects. - code – a source template for the transformation.
Will be wrapped in a template def with positional arguments with the names of
objects in
parameters. - render_kwds – a dictionary with render keywords that will be passed to the snippet.
- connectors – a list of parameter names suitable for connection. Defaults to all non-scalar parameters.
Result and attribute classes¶
-
class
reikna.core.Indices(shape)¶ Encapsulates the information about index variables available for the snippet.
-
__getitem__(dim)¶ Returns the name of the index varibale for the dimension
dim.
-
all()¶ Returns the comma-separated list of all index variable names (useful for passing the guiding indices verbatim in a load or store call).
-
-
class
reikna.core.computation.ComputationCallable(thread, parameters, kernel_calls, internal_args, temp_buffers)¶ A result of calling
compile()on a computation. Represents a callable opaque GPGPU computation.-
__call__(*args, **kwds)¶ Execute the computation. In case of the OpenCL backend, returns a list of
pyopencl.Eventobjects from nested kernel calls.
-
-
class
reikna.core.computation.ComputationParameter(computation, name, type_)¶ Bases:
TypeRepresents a typed computation parameter. Can be used as a substitute of an array for functions which are only interested in array metadata.
-
class
reikna.core.computation.KernelArgument(name, type_)¶ Bases:
TypeRepresents an argument suitable to pass to planned kernel or computation call.
-
class
reikna.core.computation.ComputationPlan(tr_tree, translator, thread, fast_math, compiler_options, keep)¶ Computation plan recorder.
-
computation_call(computation, *args, **kwds)¶ Adds a nested computation call. The
computationvalue must be aComputationobject.argsandkwdsare values to be passed to the computation.
-
constant_array(arr)¶ Adds a constant GPU array to the plan, and returns the corresponding
KernelArgument.
-
kernel_call(template_def, args, global_size, local_size=None, render_kwds=None, kernel_name='_kernel_func')¶ Adds a kernel call to the plan.
Parameters: - template_def – Mako template def for the kernel.
- args – a list consisting of
KernelArgumentobjects, or scalar values wrapped innumpy.ndarray, that are going to be passed to the kernel during execution. - global_size – global size to use for the call, in row-major order.
- local_size – local size to use for the call, in row-major order.
If
None, the local size will be picked automatically. - render_kwds – dictionary with additional values used to render the template.
- kernel_name – the name of the kernel function.
-
persistent_array(arr)¶ Adds a persistent GPU array to the plan, and returns the corresponding
KernelArgument.
-
temp_array(shape, dtype, strides=None, offset=0, nbytes=None)¶ Adds a temporary GPU array to the plan, and returns the corresponding
KernelArgument. Seearray()for the information about the parameters.Temporary arrays can share physical memory, but in such a way that their contents is guaranteed to persist between the first and the last use in a kernel during the execution of the plan.
-
temp_array_like(arr)¶ Same as
temp_array(), taking the array properties from array or array-like objectarr.Warning
Note that
pycuda.GPUArrayobjects do not have theoffsetattribute.
-
-
class
reikna.core.transformation.TransformationParameter(trf, name, type_)¶ Bases:
TypeRepresents a typed transformation parameter. Can be used as a substitute of an array for functions which are only interested in array metadata.
-
class
reikna.core.transformation.KernelParameter(name, type_, load_idx=None, store_idx=None, load_same=None, store_same=None, load_combined_idx=None, store_combined_idx=None)¶ Providing an interface for accessing kernel arguments in a template. Depending on the parameter type, and whether it is used inside a computation or a transformation template, can have different load/store attributes available.
-
name¶ Parameter name
-
shape¶
-
dtype¶
-
ctype¶
-
strides¶
-
__str__()¶ Returns the C kernel parameter name corresponding to this parameter. It is the only method available for scalar parameters.
-
load_idx¶ A module providing a macro with the signature
(idx0, idx1, ...), returning the corresponding element of the array.
-
store_idx¶ A module providing a macro with the signature
(idx0, idx1, ..., val), savingvalinto the specified position.
-
load_combined_idx(slices)¶ A module providing a macro with the signature
(cidx0, cidx1, ...), returning the element of the array corresponding to the new slicing of indices (e.g. an array with shape(2, 3, 4, 5, 6)sliced asslices=(2, 2, 1)is indexed as an array with shape(6, 20, 6)).
-
store_combined_idx(slices)¶ A module providing a macro with the signature
(cidx0, cidx1, ..., val), savingvalinto the specified position corresponding to the new slicing of indices.
-
load_same¶ A module providing a macro that returns the element of the array corresponding to the indices used by the caller of the transformation.
-
store_same¶ A module providing a macro with the signature
(val)that storesvalusing the indices used by the caller of the transformation.
-
Computations¶
Algorithms¶
General purpose algorithms.
Pure parallel computations¶
-
class
reikna.algorithms.PureParallel(parameters, code, guiding_array=None, render_kwds=None)¶ Bases:
ComputationA general class for pure parallel computations (i.e. with no interaction between threads).
Parameters: - parameters – a list of
Parameterobjects. - code – a source code for the computation.
Can be a
Snippetobject which will be passedIndicesobject for theguiding_arrayas the first positional argument, andKernelParameterobjects corresponding toparametersas the rest of positional arguments. If it is a string, suchSnippetwill be created out of it, with the parameter namesidxsfor the first one and the names ofparametersfor the remaining ones. - guiding_array – an tuple with the array shape, or the name of one of
parameters. By default, the first parameter is chosen. - render_kwds – a dictionary with render keywords for the
code.
-
compiled_signature(*args)¶ Parameters: args – corresponds to the given parameters.
-
classmethod
from_trf(trf, guiding_array=None)¶ Creates a
PureParallelinstance from aTransformationobject.guiding_arraycan be a string with a name of an array parameter fromtrf, or the correspondingTransformationParameterobject.
- parameters – a list of
Transposition (permutation)¶
-
class
reikna.algorithms.Transpose(arr_t, output_arr_t=None, axes=None, block_width_override=None)¶ Bases:
ComputationChanges the order of axes in a multidimensional array. Works analogous to
numpy.transpose.Parameters: - arr_t – an array-like defining the initial array.
- output_arr_t – an array-like defining the output array.
If
None, its shape will be derived based on the shape ofarr_t, its dtype will be equal to that ofarr_t, and any non-default offset or strides ofarr_twill be ignored. - axes – tuple with the new axes order.
If
None, then axes will be reversed.
-
compiled_signature(output:o, input:i)¶ Parameters: - output – an array with all the attributes of
arr_t, with the shape permuted according toaxes. - input – an array with all the attributes of
arr_t.
- output – an array with all the attributes of
Reduction¶
-
class
reikna.algorithms.Reduce(arr_t, predicate, axes=None, output_arr_t=None)¶ Bases:
ComputationReduces the array over given axis using given binary operation.
Parameters: - arr_t – an array-like defining the initial array.
- predicate – a
Predicateobject. - axes – a list of non-repeating axes to reduce over.
If
None, the whole array will be reduced (in which case the shape of the output array is(1,)). - output_arr_t – an output array metadata (the shape must still correspond to the result of reducing the original array over given axes, but offset and strides can be set to the desired ones).
-
compiled_signature(output:o, input:i)¶ Parameters: - input – an array with the attributes of
arr_t. - output – an array with the attributes of
arr_t, with its shape missing axes fromaxes.
- input – an array with the attributes of
Scan¶
-
class
reikna.algorithms.Scan(arr_t, predicate, axes=None, exclusive=False, max_work_group_size=None, seq_size=None)¶ Bases:
ComputationScans the array over given axis using given binary operation. Namely, from an array
[a, b, c, d, ...]and an operation., produces[a, a.b, a.b.c, a.b.c.d, ...]ifexclusiveisFalseand[0, a, a.b, a.b.c, ...]ifexclusiveisTrue(here0is the operation’s identity element).Parameters: - arr_t – an array-like defining the initial array.
- predicate – a
Predicateobject. - axes – a list of non-repeating axes to scan over.
(Note that the result will depend on the order of the axes).
If
None, the whole array will be scanned over. - exclusive – whether to perform an exclusive scan (see above).
- max_work_group_size – the maximum workgroup size to be used for the scan kernel.
- seq_size – the number of elements to be scanned sequentially. If not given, Reikna will attempt to choose the one resulting in the best performance, but sometimes a manual choice may be better.
-
compiled_signature(output:o, input:i)¶ Parameters: - input – an array with the attributes of
arr_t. - output – an array with the attributes of
arr_t.
- input – an array with the attributes of
Predicates¶
-
class
reikna.algorithms.Predicate(operation, empty)¶ A predicate used in some of Reikna algorithms (e.g.
ReduceorScan).Parameters: - operation – a
Snippetobject with two parameters which will take the names of two arguments to join. - empty – a numpy scalar with the empty value of the argument (the one which, being joined by another argument, does not change it).
- operation – a
Linear algebra¶
Linear algebra algorithms.
Matrix multiplication (dot product)¶
-
class
reikna.linalg.MatrixMul(a_arr, b_arr, out_arr=None, block_width_override=None, transposed_a=False, transposed_b=False)¶ Bases:
ComputationMultiplies two matrices using last two dimensions and batching over remaining dimensions. For batching to work, the products of remaining dimensions should be equal (then the multiplication will be performed piecewise), or one of them should equal 1 (then the multiplication will be batched over the remaining dimensions of the other matrix).
Parameters: - a_arr – an array-like defining the first argument.
- b_arr – an array-like defining the second argument.
- out_arr – an array-like definign the output; if not given, both shape and dtype
will be derived from
a_arrandb_arr. - block_width_override – if provided, it will used as a block size of the multiplication kernel.
- transposed_a – if
True, the first matrix will be transposed before the multiplication. - transposed_b – if
True, the second matrix will be transposed before the multiplication.
-
compiled_signature(output:o, matrix_a:i, matrix_b:i)¶ Parameters: - output – the output of matrix multiplication.
- matrix_a – the first argument.
- matrix_b – the second argument.
Matrix norms¶
-
class
reikna.linalg.EntrywiseNorm(arr_t, order=2, axes=None)¶ Bases:
ComputationCalculates the entrywise matrix norm (same as
numpy.linalg.norm) of an arbitrary order \(r\):\[||A||_r = \left( \sum_{i,j,\ldots} |A_{i,j,\ldots}|^r \right)^{1 / r}\]Parameters: - arr_t – an array-like defining the initial array.
- order – the order \(r\) (any real number).
- axes – a list of non-repeating axes to sum over.
If
None, the norm of the whole array will be calculated.
-
compiled_signature(output:o, input:i)¶ Parameters: - input – an array with the attributes of
arr_t. - output – an array with the attributes of
arr_t, with its shape missing axes fromaxes.
- input – an array with the attributes of
Fast Fourier transform and related utilities¶
Fast Fourier Transform¶
-
class
reikna.fft.FFT(arr_t, axes=None)¶ Bases:
ComputationPerforms the Fast Fourier Transform. The interface is similar to
numpy.fft.fftn. The inverse transform is normalized so thatIFFT(FFT(X)) = X.Parameters: - arr_t – an array-like defining the problem array.
- axes – a tuple with axes over which to perform the transform. If not given, the transform is performed over all the axes.
Note
Current algorithm works most effectively with array dimensions being power of 2 This mostly applies to the axes over which the transform is performed, beacuse otherwise the computation falls back to the Bluestein’s algorithm, which effectively halves the performance.
-
compiled_signature(output:o, input:i, inverse:s)¶ outputandinputmay be the same array.Parameters: - output – an array with the attributes of
arr_t. - input – an array with the attributes of
arr_t. - inverse – a scalar value castable to integer.
If
0,outputcontains the forward FFT ofinput, if1, the inverse one.
- output – an array with the attributes of
FFT frequency shift¶
-
class
reikna.fft.FFTShift(arr_t, axes=None)¶ Bases:
ComputationShift the zero-frequency component to the center of the spectrum. The interface is similar to
numpy.fft.fftshift, and the output is the same for the same array shape and axes.Parameters: - arr_t – an array-like defining the problem array.
- axes – a tuple with axes over which to perform the shift. If not given, the shift is performed over all the axes.
-
compiled_signature(output:o, input:i)¶ outputandinputmay be the same array.Parameters: - output – an array with the attributes of
arr_t. - input – an array with the attributes of
arr_t.
- output – an array with the attributes of
Discrete harmonic transform¶
-
reikna.dht.get_spatial_grid(modes, order, add_points=0)¶ Returns the spatial grid required to calculate the
orderpower of a function defined in the harmonic mode space of the sizemodes. Ifadd_pointsis 0, the grid has the minimum size required for exact transformation back to the mode space.
-
reikna.dht.harmonic(mode)¶ Returns an eigenfunction of order \(n = \mathrm{mode}\) for the harmonic oscillator:
\[\phi_{n} = \frac{1}{\sqrt[4]{\pi} \sqrt{2^n n!}} H_n(x) \exp(-x^2/2),\]where \(H_n\) is the \(n\)-th order “physicists’” Hermite polynomial. The normalization is chosen so that \(\int \phi_n^2(x) dx = 1\).
-
class
reikna.dht.DHT(mode_arr, add_points=None, inverse=False, order=1, axes=None)¶ Bases:
ComputationDiscrete transform to and from harmonic oscillator modes. With
inverse=Truetransforms a function defined by its expansion \(C_m,\,m=0 \ldots M-1\) in the mode space with mode functions fromharmonic(), to the coordinate space (\(F(x)\) on the grid \(x\) fromget_spatial_grid()). Withinverse=Falseguarantees to recover first \(M\) modes of \(F^k(x)\), where \(k\) is theorderparameter.For multiple dimensions the operation is the same, and the mode functions are products of 1D mode functions, i.e. \(\phi_{l,m,n}^{3D}(x,y,z) = \phi_l(x) \phi_m(y) \phi_n(z)\).
For the detailed description of the algorithm, see Dion & Cances, PRE 67(4) 046706 (2003)
Parameters: - mode_arr – an array-like object defining the shape of mode space.
If
inverse=False, its shape is used to define the mode space size. - inverse –
Falsefor forward (coordinate space -> mode space) transform,Truefor inverse (mode space -> coordinate space) transform. - axes – a tuple with axes over which to perform the transform. If not given, the transform is performed over all the axes.
- order – if
Fis a function in mode space, the number of spatial points is chosen so that the transformationDHT[(DHT^{-1}[F])^order]could be performed. - add_points – a list of the same length as
mode_arrshape, specifying the number of points in x-space to use in addition to minimally required (0by default).
-
compiled_signature_forward(modes:o, coords:i)¶
-
compiled_signature_inverse(coords:o, modes:i)¶ Depending on
inversevalue, either of these two will be created.Parameters: - modes – an array with the attributes of
mode_arr. - coords – an array with the shape depending on
mode_arr,axes,orderandadd_points, and the dtype ofmode_arr.
- modes – an array with the attributes of
- mode_arr – an array-like object defining the shape of mode space.
If
Counter-based random number generators¶
This module is based on the paper by Salmon et al., P. Int. C. High. Perform. 16 (2011). and the source code of Random123 library.
A counter-based random-number generator (CBRNG) is a parametrized function \(f_k(c)\), where \(k\) is the key, \(c\) is the counter, and the function \(f_k\) defines a bijection in the set of integer numbers. Being applied to successive counters, the function produces a sequence of pseudo-random numbers. The key is an analogue of the seed of stateful RNGs; if the CBRNG is used to generate random num bers in parallel threads, the key is a combination of a seed and a unique thread number.
There are two types of generators available, threefry (uses large number of simple functions),
and philox (uses smaller number of more complicated functions).
The latter one is generally faster on GPUs; see the paper above for detailed comparisons.
These generators can be further specialized to use words=2 or words=4
bitness=32-bit or bitness=64-bit counters.
Obviously, the period of the generator equals to the cardinality of the set of possible counters.
For example, if the counter consits of 4 64-bit numbers,
then the period of the generator is \(2^{256}\).
As for the key size, in case of threefry the key has the same size as the counter,
and for philox the key is half its size.
The CBRNG class sets one of the words of the key
(except for philox-2x64, where 32 bit of the only word in the key are used),
the rest are the same for all threads and are derived from the provided seed.
This limits the maximum number of number-generating threads (size).
philox-2x32 has a 32-bit key and therefore cannot be used in CBRNG
(although it can be used separately with the help of the kernel API).
The CBRNG class itself is stateless, same as other computations in Reikna,
so you have to manage the generator state yourself.
The state is created by the create_counters() method
and contains a size counters.
This state is then passed to, and updated by a CBRNG object.
-
class
reikna.cbrng.CBRNG(randoms_arr, generators_dim, sampler, seed=None)¶ Bases:
ComputationCounter-based pseudo-random number generator class.
Parameters: - randoms_arr – an array intended for storing generated random numbers.
- generators_dim – the number of dimensions (counting from the end)
which will use independent generators.
For example, if
randoms_arrhas the shape(100, 200, 300)andgenerators_dimis2, then in every sub-array(j, :, :),j = 0 .. 99, every element will use an independent generator. - sampler – a
Samplerobject. - seed –
Nonefor random seed, or an integer.
-
classmethod
sampler_name(randoms_arr, generators_dim, sampler_kwds=None, seed=None)¶ A convenience constructor for the sampler
sampler_namefromsamplers. The contents of the dictionarysampler_kwdswill be passed to the sampler constructor function (withbijectionbeing created automatically, anddtypetaken fromrandoms_arr).
-
compiled_signature(counters:io, randoms:o)¶ Parameters: - counters – the RNG “state”.
All attributes are equal to the ones of the result of
create_counters(). - randoms – generated random numbers.
All attributes are equal to the ones of
randoms_arrfrom the constructor.
- counters – the RNG “state”.
All attributes are equal to the ones of the result of
Kernel API¶
-
class
reikna.cbrng.bijections.Bijection(module, word_dtype, key_dtype, counter_dtype)¶ Contains a CBRNG bijection module and accompanying metadata. Supports
__process_modules__protocol.-
word_dtype¶ The data type of the integer word used by the generator.
-
key_words¶ The number of words used by the key.
-
counter_words¶ The number of words used by the counter.
-
key_dtype¶ The
numpy.dtypeobject representing a bijection key. Contains a single array fieldvwithkey_wordsofword_dtypeelements.
-
counter_dtype¶ The
numpy.dtypeobject representing a bijection counter. Contains a single array fieldvwithkey_wordsofword_dtypeelements.
-
raw_functions¶ A dictionary
dtype:function_nameof available functionsfunction_nameinmodulethat produce a random full-range integerdtypefrom aState, advancing it. Available functions:get_raw_uint32(),get_raw_uint64().
-
module¶ The module containing the CBRNG function. It provides the C functions below.
-
COUNTER_WORDS¶ Contains the value of
counter_words.
-
Word¶ Contains the type corresponding to
word_dtype.
-
Key¶ Describes the bijection key. Alias for the structure generated from
key_dtype.-
Word v[KEY_WORDS]
-
-
Counter¶ Describes the bijection counter, or its output. Alias for the structure generated from
counter_dtype.-
Word v[COUNTER_WORDS]
-
-
Counter
get_next_unused_counter(State state)¶ Extracts a counter which has not been used in random sampling.
-
uint32¶ A type of unsigned 32-bit word, corresponds to
numpy.uint32.
-
uint64¶ A type of unsigned 64-bit word, corresponds to
numpy.uint64.
-
-
reikna.cbrng.bijections.philox(bitness, counter_words, rounds=10)¶ A CBRNG based on a low number of slow rounds (multiplications).
Parameters: - bitness –
32or64, corresponds to the size of generated random integers. - counter_words –
2or4, number of integers generated in one go. - rounds –
1to12, the more rounds, the better randomness is achieved. Default values are big enough to qualify as PRNG.
Returns: a
Bijectionobject.- bitness –
-
reikna.cbrng.bijections.threefry(bitness, counter_words, rounds=20)¶ A CBRNG based on a big number of fast rounds (bit rotations).
Parameters: - bitness –
32or64, corresponds to the size of generated random integers. - counter_words –
2or4, number of integers generated in one go. - rounds –
1to72, the more rounds, the better randomness is achieved. Default values are big enough to qualify as PRNG.
Returns: a
Bijectionobject.- bitness –
-
class
reikna.cbrng.samplers.Sampler(bijection, module, dtype, randoms_per_call=1, deterministic=False)¶ Contains a random distribution sampler module and accompanying metadata. Supports
__process_modules__protocol.-
deterministic¶ If
True, every sampled random number consumes the same amount of counters.
-
randoms_per_call¶ How many random numbers one call to
samplecreates.
-
dtype¶ The data type of one random value produced by the sampler.
-
module¶ The module containing the distribution sampling function. It provides the C functions below.
-
RANDOMS_PER_CALL¶ Contains the value of
randoms_per_call.
-
Result¶ Describes the sampling result.
-
value v[RANDOMS_PER_CALL]
-
-
-
reikna.cbrng.samplers.gamma(bijection, dtype, shape=1, scale=1)¶ Generates random numbers from the gamma distribution
\[P(x) = x^{k-1} \frac{e^{-x/\theta}}{\theta^k \Gamma(k)},\]where \(k\) is
shape, and \(\theta\) isscale. Supported dtypes:float(32/64). Returns aSamplerobject.
-
reikna.cbrng.samplers.normal_bm(bijection, dtype, mean=0, std=1)¶ Generates normally distributed random numbers with the mean
meanand the standard deviationstdusing Box-Muller transform. Supported dtypes:float(32/64),complex(64/128). Produces two random numbers per call for real types and one number for complex types. Returns aSamplerobject.Note
In case of a complex
dtype,stdrefers to the standard deviation of the complex numbers (same asnumpy.std()returns), not real and imaginary components (which will be normally distributed with the standard deviationstd / sqrt(2)). Consequently, whilemeanis of typedtype,stdmust be real.
-
reikna.cbrng.samplers.uniform_float(bijection, dtype, low=0, high=1)¶ Generates uniformly distributed floating-points numbers in the interval
[low, high). Supported dtypes:float(32/64). A fixed number of counters is used in each thread. Returns aSamplerobject.
-
reikna.cbrng.samplers.uniform_integer(bijection, dtype, low, high=None)¶ Generates uniformly distributed integer numbers in the interval
[low, high). IfhighisNone, the interval is[0, low). Supported dtypes: any numpy integers. If the size of the interval is a power of 2, a fixed number of counters is used in each thread. Returns aSamplerobject.
-
reikna.cbrng.samplers.vonmises(bijection, dtype, mu=0, kappa=1)¶ Generates random numbers from the von Mises distribution
\[P(x) = \frac{\exp(\kappa \cos(x - \mu))}{2 \pi I_0(\kappa)},\]where \(\mu\) is the mode, \(\kappa\) is the dispersion, and \(I_0\) is the modified Bessel function of the first kind. Supported dtypes:
float(32/64). Returns aSamplerobject.
-
class
reikna.cbrng.tools.KeyGenerator(module, base_key)¶ Contains a key generator module and accompanying metadata. Supports
__process_modules__protocol.-
module¶ A module with the key generator function:
-
Key
key_from_int(int idx)¶ Generates and returns a key, suitable for the bijection which was given to the constructor.
-
classmethod
create(bijection, seed=None, reserve_id_space=True)¶ Creates a generator.
Parameters: - bijection – a
Bijectionobject. - seed – an integer, or numpy array of 32-bit unsigned integers.
- reserve_id_space – if
True, the last 32 bit of the key will be reserved for the thread identifier. As a result, the total size of the key should be 64 bit or more. IfFalse, the thread identifier will be just added to the key, which will still result in different keys for different threads, with the danger that different seeds produce the same sequences.
- bijection – a
-
reference(idx)¶ Reference function that returns the key given the thread identifier. Uses the same algorithm as the module.
-
Transformations¶
This module contains a number of pre-created transformations.
-
reikna.transformations.add_const(arr_t, param)¶ Returns an addition transformation with a fixed parameter (1 output, 1 input):
output = input + param.
-
reikna.transformations.add_param(arr_t, param_dtype)¶ Returns an addition transformation with a dynamic parameter (1 output, 1 input, 1 scalar):
output = input + param.
-
reikna.transformations.broadcast_const(arr_t, val)¶ Returns a transformation that broadcasts the given constant to the array output (1 output):
output = val.
-
reikna.transformations.broadcast_param(arr_t)¶ Returns a transformation that broadcasts the free parameter to the array output (1 output, 1 param):
output = param.
-
reikna.transformations.combine_complex(output_arr_t)¶ Returns a transformation that joins two real inputs into complex output (1 output, 2 inputs):
output = real + 1j * imag.
-
reikna.transformations.copy(arr_t, out_arr_t=None)¶ Returns an identity transformation (1 output, 1 input):
output = input. Output array typeout_arr_tmay have different strides, but must have the same shape and data type.
-
reikna.transformations.div_const(arr_t, param)¶ Returns a scaling transformation with a fixed parameter (1 output, 1 input):
output = input / param.
-
reikna.transformations.div_param(arr_t, param_dtype)¶ Returns a scaling transformation with a dynamic parameter (1 output, 1 input, 1 scalar):
output = input / param.
-
reikna.transformations.ignore(arr_t)¶ Returns a transformation that ignores the output it is attached to.
-
reikna.transformations.mul_const(arr_t, param)¶ Returns a scaling transformation with a fixed parameter (1 output, 1 input):
output = input * param.
-
reikna.transformations.mul_param(arr_t, param_dtype)¶ Returns a scaling transformation with a dynamic parameter (1 output, 1 input, 1 scalar):
output = input * param.
-
reikna.transformations.norm_const(arr_t, order)¶ Returns a transformation that calculates the
order-norm (1 output, 1 input):output = abs(input) ** order.
-
reikna.transformations.norm_param(arr_t)¶ Returns a transformation that calculates the
order-norm (1 output, 1 input, 1 param):output = abs(input) ** order.
-
reikna.transformations.split_complex(input_arr_t)¶ Returns a transformation that splits complex input into two real outputs (2 outputs, 1 input):
real = Re(input), imag = Im(input).
Release history¶
0.7.1 (14 Aug 2018)¶
- CHANGED:
SIZE_TandVSIZE_Tare now signed integers, to avoid problems with negative indices and strides. - CHANGED:
Arrayviews now returnArrayobjects. - CHANGED: a
Typeobject can only be equal to anotherTypeobject (before it only required equality of the attributes). - ADDED: an
output_arr_tkeyword parameter forTransposeandReduce. - ADDED: a proper support for non-zero array offsets and array views. Added
base,base_dataandnbyteskeyword parameters forarray(). Other array-allocating methods and the constructor ofTypenow also have thenbyteskeyword. - ADDED: a specialized FFT example (
examples/demo_specialized_fft.py). - ADDED: a method
padded()ofType. - ADDED: an
api_idattribute forDeviceParametersobjects. - ADDED: a
kernel_nameparameter forComputationPlan.kernel_call. Also, all built-in computations now have custom-set kernel names for the ease of profiling. - ADDED:
Typeobjects are now hashable. - ADDED: a
keepoptional parameter forThread.compile,Thread.compile_staticandComputation.compile, allowing one to preserve the generated source code and binaries. - FIXED: a bug where a computation with constant arrays could not be called from another computation.
- FIXED: an incorrect call to PyCUDA in
Array.copy().
0.7.0 (5 Jul 2018)¶
- CHANGED:
asynckeywords in multiple methods have been renamed toasync_, sinceasyncis a keyword starting from Python 3.7. - ADDED: an ability to handle array views in computations.
- ADDED: a scan class
Scan. - ADDED: an optional parameter
compiler_optionsforThread.compile,Thread.compile_staticandComputation.compile, allowing one to pass additional options to the compiler. - ADDED: support for constant arrays. On CLUDA level, use
constant_arrayskeyword parameter tocompile()andcompile_static(), and subsequentset_constant()(CUDA only) (or the analogous methods ofKernelorStaticKernel). On the computation level, useComputationPlan.constant_arrayto declare a constant array, and then pass the returned objects to kernels as any other argument. - FIXED: some methods inherited by
Arrayfrom the backend array class in case of the OpenCL backend failed because of the changed interface. - FIXED: incorrect postfix in the result of
c_constant()for unsigned long integers.
0.6.8 (18 Dec 2016)¶
- ADDED: a von Mises distribution sampler (
vonmises()). - ADDED:
div_const()anddiv_param()transformations. - ADDED:
Kernel.prepared_call,Kernel.__call__andStaticKernel.__call__now return the resultingEventobject in case of the OpenCL backend.ComputationCallable.__call__returns a list of Event objects from the nested kernel calls. - FIXED: properly handling the case of an unfinished
__init__()inThread(when__del__()tries to access non-existent attributes). - FIXED: an error when using
from_trf()without specifying the guiding array in Py3. - FIXED: (reported by @mountaindust)
Array.copynow actually copies the array contents in CUDA backend. - FIXED: (reported by @Philonoist)
load_idx/store_idxhandled expressions in parameters incorrectly (errors during macro expansion). - FIXED: a minor bug in the information displayed during the interactive
Threadcreation. - FIXED: class names in the test suite that produced errors (due to the changed rules for test discovery in
py.test). - FIXED: updated
ReturnValuesPluginin the test suite to conform topy.testinterface changes.
0.6.7 (11 Mar 2016)¶
- ADDED: an example of a transposition-based n-dimensional FFT (
demo_fftn_with_transpose.py). - FIXED: a problem with Beignet OpenCL driver where the INLINE macro was being redefined.
- FIXED: a bug in
Reducewhere reduction over a struct type with a nested array produced a template rendering error. - FIXED: now taking the minimum time over several attempts instead of the average in several performance tests (as it is done in the rest of the test suite).
- FIXED:
Transposenow calculates the required elementary transpositions in the constructor instead of doing it during the compilation.
0.6.6 (11 May 2015)¶
- FIXED: a bug with the
NANconstant not being defined in CUDA on Windows. - FIXED: (PR by @ringw) copying and arithmetic operations on Reikna arrays now preserve the array type instead of resetting it to PyOpenCL/PyCUDA array.
- FIXED: a bug in virtual size finding algorithm that could cause
get_local_id(ndim)/get_global_id(ndim)being called with an argument out of the range supported by the OpenCL standard, causing compilation fails on some platforms. - FIXED: now omitting some of redundant modulus operations in virtual size functions.
- ADDED: an example of a spectrogram-calculating computation (
demo_specgram.py).
0.6.5 (31 Mar 2015)¶
- CHANGED: the correspondence for
numpy.uintpis not registered by default anymore — this type is not really useful in CPU-GPU interaction. - FIXED: (reported by J. Vacher) dtype/ctype correspondences for 64-bit integer types are registered even if the Python interpreter is 32-bit.
- ADDED:
ComputationCallableobjects expose the attributethread. - ADDED:
FFTShiftcomputation. - ADDED: an example of an element-reshuffling transformation.
0.6.4 (29 Sep 2014)¶
- CHANGED: renamed
power_dtypeparameter toexponent_dtype(a more correct term) inpow(). - FIXED: (PR by @ringw) exception caused by printing CUDA program object.
- FIXED:
pow()(0, 0) now returns 1 as it should. - ADDED: an example of
FFTwith a custom transformation. - ADDED: a type check in the
FFTconstructor. - ADDED: an explicit
output_dtypeparameter forpow(). - ADDED:
Arrayobjects for each backend expose the attributethread.
0.6.3 (18 Jun 2014)¶
- FIXED: (@schreon) a bug preventing the usage of
EntrywiseNormwith customaxes. - FIXED: (PR by @SyamGadde) removed syntax constructions incompatible with Python 2.6.
- FIXED: added Python 3.4 to the list of classifiers.
0.6.2 (20 Feb 2014)¶
- ADDED:
pow()function module in CLUDA. - ADDED: a function
any_api()that returns some supported GPGPU API module. - ADDED: an example of
Reducewith a custom data type. - FIXED: a Py3 compatibility issue in
Reduceintroduced in0.6.1. - FIXED: a bug due to the interaction between the implementation of
from_trf()and the logic of processing nested computations. - FIXED: a bug in
FFTleading to undefined behavior on some OpenCL platforms.
0.6.1 (4 Feb 2014)¶
- FIXED:
Reducecan now pick a decreased work group size if the attached transformations are too demanding.
0.6.0 (27 Dec 2013)¶
- CHANGED: some computations were moved to sub-packages:
PureParallel,TransposeandReducetoreikna.algorithms,MatrixMulandEntrywiseNormtoreikna.linalg. - CHANGED:
scale_constandscale_paramwere renamed tomul_const()andmul_param(), and the scalar parameter name of the latter was renamed fromcoefftoparam. - ADDED: two transformations for norm of an arbitrary order:
norm_const()andnorm_param(). - ADDED: stub transformation
ignore(). - ADDED: broadcasting transformations
broadcast_const()andbroadcast_param(). - ADDED: addition transformations
add_const()andadd_param(). - ADDED:
EntrywiseNormcomputation. - ADDED: support for multi-dimensional sub-arrays in
c_constant()andflatten_dtype(). - ADDED: helper functions
extract_field()andc_path()to work in conjunction withflatten_dtype(). - ADDED: a function module
add(). - FIXED: casting a coefficient in the
normal_bm()template to a correct dtype. - FIXED:
cast()avoids casting if the value already has the target dtype (sincenumpy.castdoes not work with struct dtypes, see issue #4148). - FIXED: a error in transformation module rendering for scalar parameters with struct dtypes.
- FIXED: normalizing dtypes in several functions from
dtypesto avoid errors withnumpydtype shortcuts.
0.5.2 (17 Dec 2013)¶
- ADDED:
normal_bm()now supports complex dtypes. - FIXED: a nested
PureParallelcan now take several identical argument objects as arguments. - FIXED: a nested computation can now take a single input/output argument (e.g. a temporary array) as separate input and output arguments.
- FIXED: a critical bug in
CBRNGthat could lead to the counter array not being updated. - FIXED: convenience constructors of
CBRNGcan now properly handleNoneassamplers_kwds.
0.5.1 (30 Nov 2013)¶
- FIXED: a possible infinite loop in
compile_static()local size finding algorithm.
0.5.0 (25 Nov 2013)¶
- CHANGED:
KernelParameteris not derived fromTypeanymore (although it still retains the corresponding attributes). - CHANGED:
Predicatenow takes a dtype’d value asempty, not a string. - CHANGED: The logic of processing struct dtypes was reworked, and
adjust_alignmentwas removed. Instead, one should usealign()(which does not take aThreadparameter) to get a dtype with the offsets and itemsize equal to those a compiler would set. On the other hand,ctype_module()attempts to set the alignments such that the field offsets are the same as in the given numpy dtype (unlessignore_alignmentsflag is set). - ADDED: struct dtypes support in
c_constant(). - ADDED:
flatten_dtype()helper function. - ADDED: added
transposed_aandtransposed_bkeyword parameters toMatrixMul. - ADDED: algorithm cascading to
Reduce, leading to 3-4 times increase in performance. - ADDED:
polar_unit()function module in CLUDA. - ADDED: support for arrays with 0-dimensional shape as computation and transformation arguments.
- FIXED: a bug in
Reduce, which lead to incorrect results in cases when the reduction power is exactly equal to the maximum one. - FIXED:
Transposenow works correctly for struct dtypes. - FIXED:
bounding_power_of_2now correctly returns1instead of2being given1as an argument. - FIXED:
compile_static()local size finding algorithm is much less prone to failure now.
0.4.0 (10 Nov 2013)¶
- CHANGED:
supports_dtype()method moved fromThreadtoDeviceParameters. - CHANGED:
fast_mathkeyword parameter moved fromThreadconstructor tocompile()andcompile_static(). It is alsoFalseby default, instead ofTrue. Correspondingly,THREAD_FAST_MATHmacro was renamed toCOMPILE_FAST_MATH. - CHANGED: CBRNG modules are using the dtype-to-ctype support.
Correspondingly, the C types for keys and counters can be obtained by calling
ctype_module()onkey_dtypeandcounter_dtypeattributes. The module wrappers still define their types, but their names are using a different naming convention now. - ADDED: module generator for nested dtypes (
ctype_module()) and a function to get natural field offsets for a given API/device (adjust_alignment). - ADDED:
fast_mathkeyword parameter incompile(). In other words, nowfast_mathcan be set per computation. - ADDED:
ALIGNmacro is available in CLUDA kernels. - ADDED: support for struct types as
Computationarguments (for them, thectypesattributes contain the corresponding module obtained withctype_module()). - ADDED: support for non-sequential axes in
Reduce. - FIXED: bug in the interactive
Threadcreation (reported by James Bergstra). - FIXED: Py3-incompatibility in the interactive
Threadcreation. - FIXED: some code paths in virtual size finding algorithm could result in a type error.
- FIXED: improved the speed of test collection by reusing
Threadobjects.
0.3.6 (9 Aug 2013)¶
- ADDED: the first argument to the
TransformationorPureParallelsnippet is now areikna.core.Indicesobject instead of a list. - ADDED: classmethod
PureParallel.from_trf(), which allows one to create a pure parallel computation out of a transformation. - FIXED: improved
Computation.compile()performance for complicated computations by precreating transformation templates.
0.3.5 (6 Aug 2013)¶
- FIXED: bug with virtual size algorithms returning floating point global and local sizes in Py2.
0.3.4 (3 Aug 2013)¶
- CHANGED: virtual sizes algorithms were rewritten and are now more maintainable. In addition, virtual sizes can now handle any number of dimensions of local and global size, providing the device can support the corresponding total number of work items and groups.
- CHANGED: id- and size- getting kernel functions now have return types corresponding to their equivalents. Virtual size functions have their own independent return type.
- CHANGED:
Thread.compile_static()andComputationPlan.kernel_call()take global and local sizes in the row-major order, to correspond to the matrix indexing in load/store macros. - FIXED: requirements for PyCUDA extras (a currently non-existent version was specified).
- FIXED: an error in gamma distribution sampler, which lead to slightly wrong shape of the resulting distribution.
0.3.3 (29 Jul 2013)¶
- FIXED: package metadata.
0.3.2 (29 Jul 2013)¶
- ADDED: same module object, when being called without arguments from other modules/snippets, is rendered only once and returns the same prefix each time. This allows one to create structure declarations that can be used by functions in several modules.
- ADDED: reworked
cbrngmodule and exposed kernel interface of bijections and samplers. - CHANGED: slightly changed the algorithm that determines the order of computation parameters after a transformation is connected to it. Now the ordering inside a list of initial computation parameters or a list of a single transformation parameters is preserved.
- CHANGED: kernel declaration string is now passed explicitly to a kernel template as the first parameter.
- FIXED: typo in FFT performance test.
- FIXED: bug in FFT that could result in changing the contents of the input array to one of the intermediate results.
- FIXED: missing data type normalization in
c_constant(). - FIXED: Py3 incompatibility in
cluda.cuda. - FIXED: updated some obsolete computation docstrings.
0.3.1 (25 Jul 2013)¶
- FIXED: too strict array type check for nested computations that caused some tests to fail.
- FIXED: default values of scalar parameters are now processed correctly.
- FIXED: Mako threw name-not-found exceptions on some list comprehensions in FFT template.
- FIXED: some earlier-introduced errors in tests.
- INTERNAL:
pylintwas ran and many stylistic errors fixed.
0.3.0 (23 Jul 2013)¶
Major core API change:
- Computations have function-like signatures with the standard
Signatureinterface; no more separation of inputs/outputs/scalars. - Generic transformations were ditched; all the transformations have static types now.
- Transformations can now change array shapes, and load/store from/to external arrays in output/input transformations.
- No flat array access in kernels; all access goes through indices. This opens the road for correct and automatic stride support (not fully implemented yet).
- Computations and accompanying classes are stateless, and their creation is more straightforward.
Other stuff:
- Bumped Python requirements to >=2.6 or >=3.2, and added a dependency on
funcsig. - ADDED: more tests for cluda.functions.
- ADDED: module/snippet attributes discovery protocol for custom objects.
- ADDED: strides support to array allocation functions in CLUDA.
- ADDED: modules can now take positional arguments on instantiation, same as snippets.
- CHANGED:
ElementwisebecomesPureParallel(as it is not always elementwise). - FIXED: incorrect behavior of functions.norm() for non-complex arguments.
- FIXED: undefined variable in functions.exp() template (reported by Thibault North).
- FIXED: inconsistent block/grid shapes in static kernels
0.2.4 (11 May 2013)¶
- ADDED: ability to introduce new scalar arguments for nested computations (the API is quite ugly at the moment).
- FIXED: handling prefixes properly when connecting transformations to nested computations.
- FIXED: bug in dependency inference algorithm which caused it to ignore allocations in nested computations.
0.2.3 (25 Apr 2013)¶
- ADDED: explicit
release()(primarily for certain rare CUDA use cases). - CHANGED: CLUDA API discovery interface (see the documentation).
- CHANGED: The part of CLUDA API that is supposed to be used by other layers was moved to the
__init__.py. - CHANGED: CLUDA
Contextwas renamed toThread, to avoid confusion withPyCUDA/PyOpenCLcontexts. - CHANGED: signature of
create(); it can filter devices now, and supports interactive mode. - CHANGED:
Modulewithsnippet=Trueis nowSnippet - FIXED: added
transformation.makoandcbrng_ref.pyto the distribution package. - FIXED: incorrect parameter generation in
test/cluda/cluda_vsizes/ids. - FIXED: skipping testcases with incompatible parameters in
test/cluda/cluda_vsizes/idsandsizes. - FIXED: setting the correct length of
max_num_groupsin case of CUDA and a device with CC < 2. - FIXED: typo in
cluda.api_discovery.
0.2.2 (20 Apr 2013)¶
- ADDED: ability to use custom argument names in transformations.
- ADDED: multi-argument
mul(). - ADDED: counter-based random number generator
CBRNG. - ADDED:
reikna.elementwise.Elementwisenow supports argument dependencies. - ADDED: Module support in CLUDA; see Tutorial: modules and snippets for details.
- ADDED:
template_def(). - CHANGED:
reikna.cluda.kernel.render_template_sourceis the main renderer now. - CHANGED:
FuncCollectorclass was removed; functions are now used as common modules. - CHANGED: all templates created with
template_for()are now rendered withfrom __future__ import division. - CHANGED: signature of
OperationRecorder.add_kerneltakes a renderable instead of a full template. - CHANGED:
compile_static()now takes a template instead of a source. - CHANGED:
reikna.elementwise.Elementwisenow uses modules. - FIXED: potential problem with local size finidng in static kernels (first approximation for the maximum workgroup size was not that good)
- FIXED: some OpenCL compilation warnings caused by an incorrect version querying macro.
- FIXED: bug with incorrect processing of scalar global size in static kernels.
- FIXED: bug in variance estimates in CBRNG tests.
- FIXED: error in the temporary varaiable type in
reikna.cluda.functions.polar()andreikna.cluda.functions.exp().
0.2.1 (8 Mar 2013)¶
- FIXED: function names for kernel
polar(),exp()andconj(). - FIXED: added forgotten kernel
norm()handler. - FIXED: bug in
Py.Testtestcase execution hook which caused every test to run twice. - FIXED: bug in nested computation processing for computation with more than one kernel.
- FIXED: added dependencies between
MatrixMulkernel arguments. - FIXED: taking into account dependencies between input and output arrays as well as the ones between internal allocations — necessary for nested computations.
- ADDED: discrete harmonic transform
DHT(calculated using Gauss-Hermite quadrature).
0.2.0 (3 Mar 2013)¶
- Added FFT computation (slightly optimized PyFFT version + Bluestein’s algorithm for non-power-of-2 FFT sizes)
- Added Python 3 compatibility
- Added Thread-global automatic memory packing
- Added polar(), conj() and exp() functions to kernel toolbox
- Changed name because of the clash with another Tigger.
0.1.0 (12 Sep 2012)¶
- Lots of changes in the API
- Added elementwise, reduction and transposition computations
- Extended API reference and added topical guides
0.0.1 (22 Jul 2012)¶
- Created basic core for computations and transformations
- Added matrix multiplication computation
- Created basic documentation
